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slim create_prediction_pipeline
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bioimageio/core/prediction_pipeline/_prediction_pipeline.py

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@@ -157,7 +157,6 @@ def create_prediction_pipeline(
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bioimageio_model=bioimageio_model, devices=devices, weight_format=weight_format
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)
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named_input_shape: List[List[Tuple[str, int]]] = []
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preprocessing: List[Transform] = []
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for ipt in bioimageio_model.inputs:
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try:
@@ -167,14 +166,11 @@ def create_prediction_pipeline(
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except AttributeError:
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input_shape = ipt.shape
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named_input_shape.append(list(zip(ipt.axes, input_shape)))
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preprocessing_spec = [] if ipt.preprocessing is missing else ipt.preprocessing.copy()
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preprocessing.append(make_preprocessing(preprocessing_spec))
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named_halo: List[List[Tuple[str, int]]] = []
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postprocessing: List[Transform] = []
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for out in bioimageio_model.outputs:
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named_halo.append(list(zip(out.axes, out.halo or [0 for _ in out.axes])))
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postprocessing_spec = [] if out.postprocessing is missing else out.postprocessing.copy()
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postprocessing.append(make_postprocessing(postprocessing_spec))
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