update dev envs

Author: FynnBe

dev/env-py38.yaml

@@ -2,13 +2,12 @@
 name: core38
 channels:
   - conda-forge
-  - defaults
+  - nodefaults
 dependencies:
   - bioimageio.spec>=0.5.3.3
   - black
   - crick # uncommented
   - filelock
-  - fire
   - imageio>=2.5
   - jupyter
   - jupyter-black
@@ -27,7 +26,6 @@ dependencies:
   - pytest
   - pytest-cov
   - pytest-xdist
-  - python-dotenv
   - python=3.8 # changed
   - pytorch>=2.1
   - requests

dev/env-tf.yaml

@@ -2,13 +2,12 @@
 name: core-tf # changed
 channels:
   - conda-forge
-  - defaults
+  - nodefaults
 dependencies:
   - bioimageio.spec>=0.5.3.3
   - black
   # - crick  # currently requires python<=3.9
   - filelock
-  - fire
   - imageio>=2.5
   - jupyter
   - jupyter-black
@@ -27,7 +26,6 @@ dependencies:
   - pytest
   - pytest-cov
   - pytest-xdist
-  - python-dotenv
   # - python=3.9  # removed
   # - pytorch>=2.1 # removed
   - requests

dev/env-wo-python.yaml

@@ -2,13 +2,13 @@
 name: core
 channels:
   - conda-forge
-  - defaults
+  - nodefaults
+  - pytorch # added
 dependencies:
   - bioimageio.spec>=0.5.3.3
   - black
   # - crick  # currently requires python<=3.9
   - filelock
-  - fire
   - imageio>=2.5
   - jupyter
   - jupyter-black
@@ -27,12 +27,11 @@ dependencies:
   - pytest
   - pytest-cov
   - pytest-xdist
-  - python-dotenv
   # - python=3.9  # removed
   - pytorch>=2.1
   - requests
   - rich
-  # - ruff  # removed
+  - ruff
   - ruyaml
   - torchvision
   - tqdm

dev/env.yaml

@@ -6,7 +6,6 @@ dependencies:
   - black
   # - crick  # currently requires python<=3.9
   - filelock
-  - fire
   - imageio>=2.5
   - jupyter
   - jupyter-black
@@ -27,7 +26,6 @@ dependencies:
   - pytest
   - pytest-cov
   - pytest-xdist
-  - python-dotenv
   - python=3.9
   - pytorch>=2.1
   - requests

setup.py

@@ -35,7 +35,6 @@
         "numpy",
         "pydantic-settings >=2.3",
         "pydantic",
-        "python-dotenv",
         "requests",
         "ruyaml",
         "tqdm",