Skip to content

Update adapters and converters #440

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom
Merged
merged 191 commits into from
Mar 31, 2025
Merged

Update adapters and converters #440

merged 191 commits into from
Mar 31, 2025

Conversation

@FynnBe
Copy link
Member

@FynnBe FynnBe commented Dec 5, 2024

No description provided.

thodkatz and others added 18 commits August 15, 2024 15:17
@thodkatz
Fix weight converters and return their corresponding v5 weight descr
fbbfc57
@thodkatz
Create an interface for weight conversion
a37b568 
- Instead of having one module per conversion, use one module, and individual classes will handle the logic of the conversion
- Create an abstract class to have a common interface among conversions
@FynnBe
fix import_callable annotation
db891eb
@FynnBe
improve error traceback for single weights format attempt
a391d94
@FynnBe
add load_state
4103b51
@FynnBe
update ONNXModelAdapter
7ec7afb
@FynnBe
update TorchscriptModelAdapter typing
ed8f1db
@FynnBe
update unzipping in tensorflow model adapter
9ae626d
@FynnBe
add upper bounds to dependencies
fceed3c
@FynnBe
update dev envs
77e1e84
@FynnBe
WIP setup run expensive tests
a131369
@FynnBe
WIP resource tests
0888c52
@FynnBe
expose sha256 arg
40dfe25
@FynnBe
update torchscript adapter
bb539d4
@FynnBe
bump spec lib version
fedd43c
@FynnBe
Merge remote-tracking branch 'thodkatz/weight-converters' into fix_to…
b7d5f98 
…rch_load

# Conflicts:
#	bioimageio/core/weight_converter/torch/_torchscript.py
#	setup.py
@FynnBe
WIP refactor backend libs
7f6fdf1
@FynnBe
add summary_path arg
7fea808
@github-actions github-actions bot added ci Continuous Integration github_actions Pull requests that update Github_actions code labels Dec 5, 2024
@github-actions github-actions bot added the documentation Improvements or additions to documentation label Dec 6, 2024
@FynnBe FynnBe force-pushed the fix_torch_load branch 2 times, most recently from 16ad170 to 1ef8373 Compare March 28, 2025 12:39
@FynnBe FynnBe force-pushed the fix_torch_load branch 4 times, most recently from 0515019 to dfd52d5 Compare March 28, 2025 14:15
@github-actions
Copy link
Contributor

github-actions bot commented Mar 28, 2025

☂️ Python Coverage

current status: ✅

Overall Coverage

Lines Covered Coverage Threshold Status
3559 2726 77% 0% 🟢

New Files

File Coverage Status
bioimageio/core/backends/_init_.py 100% 🟢
bioimageio/core/backends/_model_adapter.py 76% 🟢
bioimageio/core/backends/onnx_backend.py 89% 🟢
bioimageio/core/backends/pytorch_backend.py 84% 🟢
bioimageio/core/backends/tensorflow_backend.py 58% 🟢
bioimageio/core/backends/torchscript_backend.py 92% 🟢
bioimageio/core/model_adapters.py 80% 🟢
bioimageio/core/utils/_compare.py 89% 🟢
bioimageio/core/weight_converters/init.py 100% 🟢
bioimageio/core/weight_converters/_add_weights.py 34% 🟢
bioimageio/core/weight_converters/_utils_onnx.py 100% 🟢
bioimageio/core/weight_converters/keras_to_tensorflow.py 0% 🟢
bioimageio/core/weight_converters/pytorch_to_onnx.py 96% 🟢
bioimageio/core/weight_converters/pytorch_to_torchscript.py 95% 🟢
bioimageio/core/weight_converters/torchscript_to_onnx.py 0% 🟢
TOTAL 73% 🟢

Modified Files

File Coverage Status
bioimageio/core/_init_.py 100% 🟢
bioimageio/core/_main_.py 83% 🟢
bioimageio/core/_prediction_pipeline.py 89% 🟢
bioimageio/core/_resource_tests.py 61% 🟢
bioimageio/core/axis.py 75% 🟢
bioimageio/core/block_meta.py 84% 🟢
bioimageio/core/cli.py 83% 🟢
bioimageio/core/commands.py 77% 🟢
bioimageio/core/common.py 100% 🟢
bioimageio/core/digest_spec.py 86% 🟢
bioimageio/core/io.py 76% 🟢
bioimageio/core/prediction.py 61% 🟢
bioimageio/core/proc_ops.py 81% 🟢
bioimageio/core/proc_setup.py 92% 🟢
bioimageio/core/sample.py 93% 🟢
bioimageio/core/stat_calculators.py 68% 🟢
bioimageio/core/tensor.py 85% 🟢
bioimageio/core/utils/_init_.py 75% 🟢
TOTAL 82% 🟢

updated for commit: 7e9888a by action🐍

@FynnBe FynnBe merged commit 5b8bd97 into main Mar 31, 2025
12 checks passed
@FynnBe FynnBe deleted the fix_torch_load branch March 31, 2025 07:48
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

No reviews

Assignees

No one assigned

Labels

ci Continuous Integration documentation Improvements or additions to documentation github_actions Pull requests that update Github_actions code

Projects

None yet

Milestone

No milestone

Development

Successfully merging this pull request may close these issues.

4 participants

@FynnBe @thodkatz @Tomaz-Vieira