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bump spec #462

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49081f9
bump spec
FynnBe May 22, 2025
c03d634
pin pyright in dev envs
FynnBe May 22, 2025
c4a09b3
remove pyright from old dev envs
FynnBe May 22, 2025
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4 changes: 4 additions & 0 deletions README.md
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Expand Up @@ -364,6 +364,10 @@ may be controlled with the `LOGURU_LEVEL` environment variable.

## Changelog

### 0.9.0 (coming soon)

- update to [bioimageio.spec 0.5.4.2](https://github.com/bioimage-io/spec-bioimage-io/blob/main/changelog.md#bioimageiospec-0542)

### 0.8.0

- breaking: removed `decimals` argument from bioimageio CLI and `bioimageio.core.commands.test()`
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3 changes: 1 addition & 2 deletions dev/env-dev.yaml
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Expand Up @@ -5,7 +5,7 @@ channels:
- nodefaults
- pytorch
dependencies:
- bioimageio.spec==0.5.4.1
- bioimageio.spec==0.5.4.2
- black
# - crick # currently requires python<=3.9
- h5py
Expand All @@ -26,7 +26,6 @@ dependencies:
- psutil
- pydantic
- pydantic-settings
- pyright
- pytest
- pytest-cov
# - python=3.11 # removed
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4 changes: 2 additions & 2 deletions dev/env-full.yaml
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Expand Up @@ -4,7 +4,7 @@ channels:
- nodefaults
- pytorch
dependencies:
- bioimageio.spec==0.5.4.1
- bioimageio.spec==0.5.4.2
- black
# - careamics # TODO: add careamics for model testing (currently pins pydantic to <2.9)
- cellpose # for model testing
Expand All @@ -28,7 +28,7 @@ dependencies:
- psutil
- pydantic
- pydantic-settings
- pyright
- pyright==1.1.396
- pytest
- pytest-cov
- python=3.11 # 3.12 not supported by cellpose->fastremap
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4 changes: 2 additions & 2 deletions dev/env-gpu.yaml
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Expand Up @@ -4,7 +4,7 @@ channels:
- conda-forge
- nodefaults
dependencies:
- bioimageio.spec==0.5.4.1
- bioimageio.spec==0.5.4.2
- black
- cellpose # for model testing
# - crick # currently requires python<=3.9
Expand All @@ -26,7 +26,7 @@ dependencies:
- psutil
- pydantic<2.9
- pydantic-settings
- pyright
- pyright==1.1.396
- pytest
- pytest-cov
- python=3.11
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3 changes: 1 addition & 2 deletions dev/env-py38.yaml
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Expand Up @@ -5,7 +5,7 @@ channels:
- nodefaults
- pytorch
dependencies:
- bioimageio.spec==0.5.4.1
- bioimageio.spec==0.5.4.2
- black
- crick # uncommented
- h5py
Expand All @@ -26,7 +26,6 @@ dependencies:
- psutil
- pydantic
- pydantic-settings
- pyright
- pytest
- pytest-cov
- python=3.8 # changed
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2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -30,7 +30,7 @@
],
packages=find_namespace_packages(exclude=["tests"]),
install_requires=[
"bioimageio.spec ==0.5.4.1",
"bioimageio.spec ==0.5.4.2",
"h5py",
"imagecodecs",
"imageio>=2.10",
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