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SnpEff 5.2a not working with latest java-17

Status: Open.

#481 In bioinfo-chru-strasbourg/howard;

· Elyanes opened on Mar 4, 2026

Ensure bgzip module is necessary

improveImprove codeImprove code

Status: Open.

#473 In bioinfo-chru-strasbourg/howard;

· antonylebechec opened on Jan 15, 2026

publish latest version on PyPi

Status: Open.

#457 In bioinfo-chru-strasbourg/howard;

· dlaehnemann opened on Dec 1, 2025

Input equal output

cleanClean codeClean code

Status: Open.

#456 In bioinfo-chru-strasbourg/howard;

· JbaptisteLam opened on Dec 1, 2025

SpliceAI with cache

enhancementNew feature or requestNew feature or request

Status: Open.

#337 In bioinfo-chru-strasbourg/howard;

· JbaptisteLam opened on Dec 19, 2024

·  

Enhancement

CADD annotations from offline model (docker + snakemake)

enhancementNew feature or requestNew feature or request

Status: Open.

#294 In bioinfo-chru-strasbourg/howard;

· JbaptisteLam opened on Oct 24, 2024

·  

Enhancement

GA4GH compatibility

enhancementNew feature or requestNew feature or request

improveImprove codeImprove code

Status: Open.

#258 In bioinfo-chru-strasbourg/howard;

· antonylebechec opened on Aug 27, 2024

Clean SonarLint issues

cleanClean codeClean code

Status: Open.

#226 In bioinfo-chru-strasbourg/howard;

· antonylebechec opened on Apr 21, 2024

Add a annotation strategy

enhancementNew feature or requestNew feature or request

Status: Open.

#165 In bioinfo-chru-strasbourg/howard;

· antonylebechec opened on Mar 7, 2024

Validation tool

enhancementNew feature or requestNew feature or request

Status: Open.

#33 In bioinfo-chru-strasbourg/howard;

· antonylebechec opened on Apr 28, 2023

Variants deduplication

enhancementNew feature or requestNew feature or request

Status: Open.

#6 In bioinfo-chru-strasbourg/howard;

· antonylebechec opened on Apr 3, 2023

Docs

Status: Open.

#4 In bioinfo-chru-strasbourg/howard;

· antonylebechec opened on Apr 1, 2023