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[FIX] MDS: Support distances without domain information#2335

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lanzagar merged 5 commits intobiolab:masterfrom
jerneju:attribute-mds
Jun 16, 2017
Merged

[FIX] MDS: Support distances without domain information#2335
lanzagar merged 5 commits intobiolab:masterfrom
jerneju:attribute-mds

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@jerneju jerneju commented May 23, 2017

Issue

screenshot_20170523_124611

Description of changes
Includes
  • Code changes
  • Tests
  • Documentation

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jerneju commented May 23, 2017

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jerneju commented May 23, 2017

@jerneju jerneju changed the title [WIP][FIX] MDS: Support distances without domain information [FIX] MDS: Support distances without domain information May 29, 2017

def update_controls(self):
if self.data is None and getattr(self.matrix, 'axis', 1) == 0:
if self.data is None and getattr(self.matrix, 'axis', 1) in [0, 1]:
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axis is always either 0 or 1!

.. attribute:: axis

    If axis=1 we calculate distances between rows,
    if axis=0 we calculate distances between columns.

This check is then redundant.

if self.data is None and getattr(self.matrix, 'axis', 1) in [0, 1]:
# Column-wise distances
attr = "Attribute names"
self.labelvar_model[:] = ["No labels", attr]
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... and if it's 1, the distance is computed over rows, so the widget shouldn't offer Attribute names as labels. The option should be called something like "Index". Offer it only for labels, but not for colors, shapes and sizes since it makes no sense there.

While your at it, fix old typeo: solor -> color.

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codecov-io commented Jun 14, 2017

Codecov Report

Merging #2335 into master will increase coverage by 0.02%.
The diff coverage is 78.04%.

@@            Coverage Diff             @@
##           master    #2335      +/-   ##
==========================================
+ Coverage   74.14%   74.16%   +0.02%     
==========================================
  Files         322      322              
  Lines       55933    55930       -3     
==========================================
+ Hits        41471    41481      +10     
+ Misses      14462    14449      -13

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jerneju commented Jun 14, 2017

@lanzagar lanzagar added this to the 3.4.4 milestone Jun 16, 2017
self.colorvar_model[:] = ["Same color"]

self.color_value = "Same shape"
self.shape_value = "Same color"
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These two are switched :)

@lanzagar lanzagar merged commit 8d882bf into biolab:master Jun 16, 2017
@jerneju jerneju deleted the attribute-mds branch June 21, 2017 07:23
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4 participants