[FIX] heatmap: Do not crash on all zero column#2916
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rokgomiscek merged 1 commit intobiolab:masterfrom Feb 23, 2018
Merged
[FIX] heatmap: Do not crash on all zero column#2916rokgomiscek merged 1 commit intobiolab:masterfrom
rokgomiscek merged 1 commit intobiolab:masterfrom
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Codecov Report
@@ Coverage Diff @@
## master #2916 +/- ##
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+ Coverage 82.1% 82.1% +<.01%
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Files 328 328
Lines 56262 56268 +6
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+ Hits 46194 46201 +7
+ Misses 10068 10067 -1 |
lanzagar
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Issue
Heatmap with column clustering crashes when data contains a column an all-zero column.
Column clustering is done using Pearson distance which is nan for a column of all zeros.
Description of changes
Convert non-finite values to finite using np.nan_to_num. This results in zero feature being clustered with a random other feature, but the rest of the clustering should make sense.
Includes