[ENH] Table: speed-up computation of basic stats of given columns.#3166
Merged
lanzagar merged 2 commits intobiolab:masterfrom Aug 17, 2018
Merged
[ENH] Table: speed-up computation of basic stats of given columns.#3166lanzagar merged 2 commits intobiolab:masterfrom
lanzagar merged 2 commits intobiolab:masterfrom
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thocevar
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Codecov Report
@@ Coverage Diff @@
## master #3166 +/- ##
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+ Coverage 82.37% 82.37% +<.01%
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Files 336 336
Lines 58321 58319 -2
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Hits 48042 48042
+ Misses 10279 10277 -2 |
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Issue
Imputation of tables with a large number of features is slow/unfeasible (e.g. #3129).
Imputation is done column by column, each time computing the basic stats. However, each time these stats are computed for the entire table (all columns) resulting in a quadratic time complexity.
Description of changes
Table's
_compute_basic_statshas acolumnsparameter. Before, it passed the entire table tostatistics.utils.statsand filtered the results. Now, we filter the table by given columns before passing it on for stats computation.Includes