[FIX] Distribution: vectorize variance, speeds up normalization#5230
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janezd merged 1 commit intobiolab:masterfrom Feb 4, 2021
Merged
[FIX] Distribution: vectorize variance, speeds up normalization#5230janezd merged 1 commit intobiolab:masterfrom
janezd merged 1 commit intobiolab:masterfrom
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Codecov Report
@@ Coverage Diff @@
## master #5230 +/- ##
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+ Coverage 85.17% 85.19% +0.01%
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Files 300 300
Lines 60970 60970
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+ Hits 51934 51942 +8
+ Misses 9036 9028 -8 |
This makes normalization much faster.
markotoplak
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Issue
Variance used python loops, making it very inefficient. This change alone speeds-up normalization for test-case from #5219 by 10x. Issue #5219 will remain open because it is still possible to substantially improve normalization.
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