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Handle associations from multiple relations by taking their union #384

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Handle associations from multiple relations by taking their union #384

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2254439
Append associations from multiple relations when creating AssociationSet
deepakunni3 Oct 4, 2019
a9c478f
Ensure that relation argument is passed properly when fetching associ…
deepakunni3 Oct 4, 2019
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10 changes: 6 additions & 4 deletions ontobio/assoc_factory.py
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Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,7 @@ def __init__(self):
initializes based on an ontology name
"""

def create(self, ontology=None,subject_category=None,object_category=None,evidence=None,taxon=None,relation=None, file=None, fmt=None, skim=True):
def create(self, ontology=None,subject_category=None,object_category=None,evidence=None,taxon=None, relation=None, file=None, fmt=None, skim=True):
"""
creates an AssociationSet

Expand Down Expand Up @@ -60,6 +60,7 @@ def create(self, ontology=None,subject_category=None,object_category=None,eviden
logging.info("Fetching assocs from store")
assocs = bulk_fetch_cached(subject_category=subject_category,
object_category=object_category,
relation=relation,
evidence=evidence,
taxon=taxon)

Expand All @@ -70,11 +71,12 @@ def create(self, ontology=None,subject_category=None,object_category=None,eviden
amap = {}
subject_label_map = {}
for a in assocs:
rel = a['relation']
subj = a['subject']
subject_label_map[subj] = a['subject_label']
amap[subj] = a['objects']

if subj in amap:
amap[subj].extend(a['objects'])
else:
amap[subj] = a['objects']

aset = AssociationSet(ontology=ontology,
meta=meta,
Expand Down