Simplealign#46

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yinjun111 wants to merge 9 commits intobioperl:masterfrom

yinjun111:simplealign

Commits on Aug 31, 2012

Replace SimpleAlign.pm
Jun Yin
committed

Commits on Sep 4, 2012

get_nse
yinjun111
committed

Commits on Sep 12, 2012

All contradicts fixed
Jun Yin
committed
Reformat SimpleAlign2.t
Jun Yin
committed

Commits on Oct 2, 2012

Merge branch 'simplealign', remote-tracking branch 'remotes/bioperllive/master' into simplealign
Jun Yin
committed
up-to-date Oct 2,2012
Jun Yin
committed
Backward support for mask_columsn
Jun Yin
committed
Improved backward support for remove_columns
Jun Yin
committed
remove_columns updated
Jun Yin
committed