Skip to content

Move escher to extras#287

Open
matthiaskoenig wants to merge 1 commit intobiosustain:develfrom
matthiaskoenig:patch-3
Open

Move escher to extras#287
matthiaskoenig wants to merge 1 commit intobiosustain:develfrom
matthiaskoenig:patch-3

Conversation

@matthiaskoenig
Copy link
Contributor

Escher has very old dependencis such as Jinja2 < 3 which is breaking many other packages. Moving this to extras to allow using cameo with other packages.

Escher has very old dependencis such as Jinja2 < 3 which is breaking many other packages. Moving this to extras to allow using cameo with other packages.
@carrascomj
Copy link
Member

I agree with the change but it requires implementing some try-except blocks (like in https://github.com/biosustain/cameo/blob/devel/cameo/flux_analysis/simulation.py#L486) because some modules import escher by default.

I believe that https://github.com/biosustain/cameo/blob/devel/cameo/visualization/visualization.py and https://github.com/biosustain/cameo/blob/devel/cameo/strain_design/deterministic/flux_variability_based.py#L822 (the latter uses an import form escher_ext) are the culprits of the top-level imports.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants