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Creates a commands module to store the command logic in one location. Moves much settings configuration into the config submodule in commands Attempts to create a clear logically distinction between cli logic and hub logic
Moves the operations_mode decorator into the new module. Adds another decorator for checking the python system path and adding any paths specified in our designated .pth file. This applies for any file that might need access to the hub-parsers
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❯ export BTCLI_DEBUG=1; biothings-cli dataplugin dump -m
[16:16:55] DEBUG Inferring singular advanced plugin from directory structure
DEBUG Popen(['git', 'version'], cwd=/home/schaffjr/workspace/plugin-development/pending.api/plugins/nodenorm, stdin=None, shell=False, universal_newlines=False)
DEBUG Popen(['git', 'version'], cwd=/home/schaffjr/workspace/plugin-development/pending.api/plugins/nodenorm, stdin=None, shell=False, universal_newlines=False)
WARNING Found stale datasource 'nodenorm', marking upload status as 'canceled'
DEBUG Assistant Plugin Name: nodenorm
Assistant Plugin Path: /home/schaffjr/workspace/plugin-development/pending.api/plugins/nodenorm
Data Plugin Folder: /home/schaffjr/workspace/plugin-development/pending.api/plugins/nodenorm
DEBUG For plugin "nodenorm", selecting loader class "AdvancedPluginLoader"
INFO Registering 'nodenorm' to dump manager
INFO Attempting to load module nodenorm
DEBUG Found a class based on BaseDumper: '<class 'nodenorm.dumper.NodeNormDumper'>'
DEBUG Found classes to register: [<class 'nodenorm.dumper.NodeNormDumper'>]
INFO Registering 'nodenorm' to upload manager(s)
INFO Attempting to load module nodenorm
WARNING nodenorm module discovered in sys.modules
DEBUG Found a class based on BaseSourceUploader: '<class 'nodenorm.uploader.NodeNormUploader'>'
DEBUG Found classes to register: [<class 'nodenorm.uploader.NodeNormUploader'>]
DEBUG Creating new NodeNormDumper instance
WARNING Marking dump as successful without running the dumper
INFO Done!
INFO Success! 🚀 |
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Adds the ability to mark a dump as successful from the biothings-cli tool. Enables the ability for setting up the dump files manually and then confirming the successful dump on the backend. Useful for larger dumps if you accidentally remove the dump trigger