upgrade to Jupyter Book v2

.github/workflows/publish.yml

@@ -38,8 +38,7 @@ jobs:
 
       - name: Build the book
         run: |
-          mkdir -p ./jupyter_cache
-          jupyter-book build -nv --keep-going book
+          jupyter book build --html
 
       - name: Publish to GitHub Pages
         uses: JamesIves/github-pages-deploy-action@v4

.github/workflows/test.yml

@@ -31,7 +31,4 @@ jobs:
           pip install -r requirements.txt
       - name: Build the book
         run: |
-          mkdir -p ./jupyter_cache
-          ls ./jupyter_cache
-          jupyter-book build -n --keep-going book
-          ls ./jupyter_cache
+          jupyter book build --html

book/myst.yml

@@ -0,0 +1,41 @@
+version: 1
+project:
+  title: The Sampling Book Project
+  authors:
+    - name: The Blackjax Team
+  exclude:
+    - README.md
+  github: blackjax-devs/sampling-book
+  bibliography:
+    - references.bib
+  exports:
+    - format: pdf
+      template: plain_latex_book
+      output: exports/book.pdf
+  toc:
+    - file: index.md
+    - title: Algorithms
+      children:
+        - file: algorithms/contour_sgld.md
+        - file: algorithms/cyclical_sgld.md
+        - file: algorithms/pathfinder.md
+        - file: algorithms/PeriodicOrbitalMCMC.md
+        - file: algorithms/TemperedSMC.md
+        - file: algorithms/TemperedSMCWithOptimizedInnerKernel.md
+        - file: algorithms/mclmc.md
+    - title: Models
+      children:
+        - file: models/change_of_variable_hmc.md
+        - file: models/GP_EllipticalSliceSampler.md
+        - file: models/GP_Marginal.md
+        - file: models/sparse_regression.md
+        - file: models/logistic_regression.md
+        - file: models/LogisticRegressionWithLatentGaussianSampler.md
+        - file: models/mlp.md
+        - file: models/hierarchical_bnn.md
+        - file: models/RegimeSwitchingModel.md
+        - file: models/probabilistic_ode_solver_parameter_estimation.md
+site:
+  options:
+    folders: true
+  template: book-theme

myst.yml

@@ -0,0 +1,15 @@
+# See docs at: https://mystmd.org/guide/frontmatter
+version: 1
+project:
+  id: 89d92e9e-c1de-4cb7-bc33-e9649a9ed259
+  # title:
+  # description:
+  # keywords: []
+  # authors: []
+  github: https://github.com/blackjax-devs/sampling-book
+  # To autogenerate a Table of Contents, run "jupyter book init --write-toc"
+site:
+  template: book-theme
+  # options:
+  #   favicon: favicon.ico
+  #   logo: site_logo.png