Feature/pre commit

.devcontainer/Dockerfile

@@ -10,4 +10,4 @@ RUN curl -L -o /usr/local/bin/pixi -fsSL --compressed "https://github.com/prefix
 USER vscode
 WORKDIR /home/vscode
 
-RUN echo 'eval "$(pixi completion -s bash)"' >> /home/vscode/.bashrc
+RUN echo 'eval "$(pixi completion -s bash)"' >> /home/vscode/.bashrc

.gitattributes

@@ -43,4 +43,4 @@
 # numpy file format
 *.npy filter=lfs diff=lfs merge=lfs -text
 # GitHub syntax highlighting
-pixi.lock linguist-language=YAML merge=ourslock
+pixi.lock linguist-language=YAML merge=ourslock

.github/workflows/ci.yml

@@ -29,4 +29,4 @@ jobs:
       - name: Upload coverage reports to Codecov
         uses: codecov/codecov-action@v4
         env:
-          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

.github/workflows/pre-commit.yaml

@@ -0,0 +1,10 @@
+name: pre-commit
+
+on: [pull_request]
+
+jobs:
+  pre-commit:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: pre-commit/[email protected]

.github/workflows/publish.yml

@@ -15,4 +15,4 @@ jobs:
       with:
         pypi-token: ${{ secrets.PYPI_API_TOKEN }}
         gh-token: ${{ secrets.GITHUB_TOKEN }}
-        parse-changelog: true
+        parse-changelog: true

.pre-commit-config.yaml

@@ -0,0 +1,44 @@
+# To use:
+#
+#     pre-commit run -a
+#
+# Or:
+#
+#     pre-commit install  # (runs every time you commit in git)
+#
+# To update this file:
+#
+#     pre-commit autoupdate
+#
+# See https://github.com/pre-commit/pre-commit
+
+repos:
+  # Standard hooks
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.2.0
+    hooks:
+      - id: check-added-large-files
+      # - id: check-ast
+      # - id: check-case-conflict
+      # - id: check-docstring-first
+      - id: check-merge-conflict
+      - id: check-symlinks
+      - id: check-yaml
+        args: ['--unsafe']  # Fixes errors parsing custom jinja templates
+      # - id: debug-statements
+      - id: end-of-file-fixer
+      # - id: mixed-line-ending
+      # - id: trailing-whitespace
+      # - id: fix-byte-order-marker
+
+  # Formatter for python
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.7.3
+    hooks:
+      # Run the linter.
+      - id: ruff
+        types_or: [ python, pyi ]
+        args: [ --fix ]
+      # Run the formatter.
+      - id: ruff-format
+        types_or: [ python, pyi ]

.vscode/extensions.json

@@ -14,4 +14,4 @@
         "ryanluker.vscode-coverage-gutters",
         "jjjermiah.pixi-vscode"       
     ]
-}
+}

.vscode/settings.json

@@ -11,4 +11,4 @@
 		"/home/vscode/.local/lib/python3.10/site-packages/python_template/**": true
 	},
 	"python.analysis.autoImportCompletions": false //vscode gets it wrong more than right and mostly gets in the way
-}
+}

CHANGELOG.md

@@ -3,5 +3,3 @@
 ## python_template
 
 ## [0.0.0]
-
-

README.md

@@ -94,6 +94,3 @@ There are two core tasks.
 2. run \<cfg\>
 
     This runs python with the file set in \<cfg\>
-
-
-

docs/requirements.txt

@@ -1,3 +1,3 @@
 sphinxcontrib-napoleon
 sphinx-rtd-theme
-sphinx-autoapi
+sphinx-autoapi

pyproject.toml

@@ -41,6 +41,7 @@ test = [
   "hypothesis>=6.104.2,<=6.116.0",
   "ruff>=0.5.0,<=0.7.2",
   "coverage>=7.5.4,<=7.6.4",
+  "pre-commit<=4.0.1"
 ]
 
 [build-system]
@@ -60,6 +61,7 @@ py313 = ["py313","test"]
 
 
 [tool.pixi.tasks]
+pre-commit = "pre-commit run -a"
 format = "black ."
 check-clean-workspace = "git diff --exit-code"
 ruff-lint = "ruff check . --fix"

scripts/setup_host.sh

@@ -56,4 +56,4 @@ echo 'eval "$(pixi completion --shell bash)"' >> ~/.bashrc
 
 sudo groupadd docker
 sudo usermod -aG docker $USER
-newgrp docker || true
+newgrp docker || true