chore: Clean up workflow references and fix path inconsistencies

[pbean]

Summary

• Fixed bad architecture file calls and legacy documentation references across BMM workflows
• Corrected case sensitivity issues to remove ambiguity
• Updated workflow instructions and templates to reference correct paths
• Removed mentions of json still in the context workflows and such and left only xml
• moved story-context-x-x.md file output to story dir variable location
• disabled yolo mode on dev-story

Changes

• Updated 18 files in BMM workflows directory
• Fixed references to technical decision templates
• Corrected agent configuration paths
• Updated workflow instructions with proper file references

Test plan

• Verify workflow paths resolve correctly
• Check that all referenced files exist at updated paths
• Ensure agent configurations load properly

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