styloid-r3

• Adds the option to have detailed eigenvector elements included in the Results table for Moments of Inertia

styloid-r2

• Speed improvements to Particle Analyser's particle labelling step

Java's inbuild HashSet<Integer> was used heavily to record collisions between partial labels, and has been replaced by the faster and more memory-efficient IntHashSet from Eclipse Collections. In testing it results in about 20% overall speedup to particle labelling.

styloid-r1

• Adds a progress bar to Ellipsoid Factor
• Code style improvements
• Additional tests for Anisotropy

styloid

First user ready release of BoneJ2

Fixes numerous performance and algorithmic problems found during the -experimental phase.

• Ellipsoid Factor samples ellipsoids more randomly, ensuring that smaller features are better fitted
• Anisotropy uses every pixel in the volume and uses equal probe length in all directions
• Particle Analyser is much faster and adds branch length measurement
• Moments is more multithreaded and faster

Improve and fix ParticleCounter

Fixes #170
Additional option to colour particles by orientation

cuneiform-experimental-patch3

This release is a further patch to the cuneiform-experimental series of releases.
It contains two main developments.
First, it includes two bugfixes by @mdoube to ParticleCounter.java.
Second, it marks a significant simplification of the release process. For this and any future release, artefacts will be released under a single "big bang" release tag (in this case 6.0.0). Note that this will almost certainly lead to 'vacuous' release of some artefacts, as not all artefacts will change from release to release. Many thanks to @ctrueden for helping us perform this adaptation.

cuneiform-experimental-patch2

A quick fix to the previous release. Fixes the help button in Options > BoneJ Usage (Modern) Contains the following artefacts:

• bonej-legacy-util_:5.0.1
• bonej-legacy-plugins_:5.0.1
• bonej-ops:0.5.0
• bonej-utilities:0.5.0
• bonej-plugins:0.5.1

The release corresponds to the aggregate pom version 8.0.1. For more details see the release notes. Artefacts can be accessed at http://maven.imagej.net and the release can be downloaded from the update site.

cuneiform-experimental-patch1

Fourth experimental release of BoneJ, a patch to the previous that adds no new major features apart from usage reporting. Contains the following artefacts:

• bonej-legacy-util_:5.0.1
• bonej-legacy-plugins_:5.0.1
• bonej-ops:0.5.0
• bonej-utilities:0.5.0
• bonej-plugins:0.5.0

The release corresponds to the aggregate pom version 8.0.0. For more details see the release notes. Artefacts can be accessed at http://maven.imagej.net and the release can be downloaded from the update site.

cuneiform-experimental

Third experimental release of BoneJ. This is the first release available from the http://sites.imagej.net/BoneJ/ update site. Contains the following artefacts:

• bonej-legacy-util_:4.0.0
• bonej-legacy-plugins_:4.0.0
• bonej-ops:0.4.0
• bonej-utilities:0.4.0
• bonej-plugins:0.4.0

For more details see the release notes.
Artefacts can be accessed at http://maven.imagej.net