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IgorTatarnikov merged 5 commits into from
Nov 4, 2025
Merged

Document Dorr Mouse MRI Atlas #397

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1a7a688
automated target selection docs
saarah815 Aug 27, 2025
8843a1d
add dorr atlas to index.md and atlas-details.md
saarah815 Nov 2, 2025
53c074a
remove automated target selection docs
saarah815 Nov 3, 2025
1e860fe
Update docs/source/documentation/brainglobe-atlasapi/index.md
saarah815 Nov 4, 2025
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Merge branch 'main' into dorr_atlas
IgorTatarnikov Nov 4, 2025
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9 changes: 9 additions & 0 deletions docs/source/documentation/brainglobe-atlasapi/index.md
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Expand Up @@ -52,6 +52,7 @@ A number of atlases are in development, but those available currently are:
| [Kocher Bumblebee Brain Atlas](https://doi.org/10.1016/j.cub.2022.04.066) | 2.542 x 1.2407 x 1.2407 micron | Adult Worker | Confocal | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#kocher-bumblebee-brain-atlas) |
| Drosophila wing disc instar3 atlas| 2 micron | 3rd Instar Larvae | Confocal | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#Drosophila-wing-disc-instar3-atlas) |
| [DeMBA Developmental Mouse Brain Atlas](https://doi.org/10.1038/s41467-025-63177-9) | 10, 20, and 25 micron | every day from P04 to P56 | MRI, STPT, LSFM | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#demba-developmental-mouse-brain-atlas) |
| [Dorr MRI Mouse Atlas](https://doi.org/10.1016/j.neuroimage.2008.03.037) | 32 micron | 12 week old | MRI | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#dorr-mri-mouse-atlas) |


**Acronyms:**
Expand Down Expand Up @@ -98,3 +99,11 @@ If you find the BrainGlobe Atlas API useful, please cite the paper in your work:
>Claudi, F., Petrucco, L., Tyson, A. L., Branco, T., Margrie, T. W. and Portugues, R. (2020). BrainGlobe Atlas API: a common interface for neuroanatomical atlases. Journal of Open Source Software, 5(54), 2668, <https://doi.org/10.21105/joss.02668>

**Don't forget to cite the developers of the atlas that you used!**


## API Reference

```{toctree}
:maxdepth: 1
api
```
8 changes: 8 additions & 0 deletions docs/source/documentation/brainglobe-atlasapi/usage/atlas-details.md
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Expand Up @@ -393,7 +393,15 @@ Available versions:
* at P56
* `demba_allen_seg_dev_mouse_p56_20um`
* `demba_allen_seg_dev_mouse_p56_25um`
### [Dorr MRI Mouse Atlas](https://doi.org/10.1016/j.neuroimage.2008.03.037)
This atlas is a high-resolution, three-dimensional MRI-based atlas of the adult C57Bl/6J mouse brain, providing
comprehensive anatomical coverage of the cerebrum, cerebellum, and brainstem. The atlas was constructed from
within-skull, T2-weighted MR images acquired at 32 μm isotropic resolution from forty 12-week-old mice scanned on a 7 T
scanner. Following normalisation, registration, and averaging of individual scans, 62 distinct brain structures were
manually delineated.

Available versions:
* `dorr_mouse_mri_32um`

## Rat
### [Waxholm Space atlas of the Sprague Dawley rat brain](https://doi.org/10.1038/s41592-023-02034-3)
Expand Down