v1.9.0

What's Changed

• Update use of fancylog API by @adamltyson in #561
• Pin minimum fancylog version by @adamltyson in #564
• Update badges by @adamltyson in #563
• Remove pytest xfail markers and pin napari to >0.6.5 by @adamltyson in #562
• Add tiled thresholds to 2d filtering for determining foreground pixels by @matham in #545
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #566
• Fix progress bar text in cell detection widget by @FatmaElsharkawy in #510
• Free space on CI/CD by @IgorTatarnikov in #568
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #569
• free-disk space action should run on all ubuntu runners by @alessandrofelder in #570
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #573
• Propagate image scale to napari Points layers by @AlgoFoe in #572
• Raise explicit error on uint16 label overflow in connect_four by @AlgoFoe in #574
• Pass ENV variables necessary for getpass.getuser to tox for CI by @IgorTatarnikov in #577
• make check_training_data_exists more strict, and test it by @alessandrofelder in #528
• Optimisation: vectorised indexing to replace loop in coords_to_volume by @HARSHDIPSAHA in #583
• Fix Augmentation Likelihood by @HARSHDIPSAHA in #581

New Contributors

• @FatmaElsharkawy made their first contribution in #510
• @AlgoFoe made their first contribution in #572
• @HARSHDIPSAHA made their first contribution in #583

Full Changelog: v1.8.0...v1.9.0

v1.8.0

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #534
• Add consistent parameter docs to the main functions and napari by @matham in #542
• Visualize 2d and 3d filtering steps by @matham in #544
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #552
• Pin napari to >=0.6.1 by @alessandrofelder in #553
• Expose pin_memory to main and napari by @matham in #546
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #554
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #556
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #558
• Modify curation widget keybindings to enable overwrite option by @adamltyson in #560

Full Changelog: v1.7.0...v1.8.0

v1.7.0

What's Changed

• Remove save weights option from training widget by @parharti in #499
• Inform the user when they supply just the weights in place of the full model by @parharti in #490
• Pull Request: Implementing Issue #295 – "Check Location of Detected Cells in Tests" by @Menna1812 in #509
• Update pinned pytorch version by @ayush2281 in #519
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #521
• Fix #423 : Clean up TensorFlow-related code after migrating to Keras 3.0 with PyTorch backend by @0Anshu1 in #523
• Improve printing & logging by @parharti in #507
• Fix for deleted layers hanging around in CurationWidget by @DPWebster in #497
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #529
• Don't deepcopy input arrays to prevent loading into RAM by @matham in #531
• Expose CPU/GPU selection in Napari (default to GPU), remove use_scipy param (always True on CPU), and improve batch_size docstring (#464) by @Fede2717 in #503
• Run scheduled tests on napari main by @IgorTatarnikov in #533

New Contributors

• @parharti made their first contribution in #499
• @Menna1812 made their first contribution in #509
• @ayush2281 made their first contribution in #519
• @0Anshu1 made their first contribution in #523
• @DPWebster made their first contribution in #497
• @Fede2717 made their first contribution in #503

Full Changelog: 1.6.0...v1.7.0

v1.6.0

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #489
• Standardize .yml and .yaml Extensions for Consistency by @nischitkumar in #488

New Contributors

• @nischitkumar made their first contribution in #488

Full Changelog: v1.5.1...v1.6.0

v1.5.1

What's Changed

• Move qt-niu dependency by @adamltyson in #486

Full Changelog: v1.5.0...v1.5.1

v1.5.0

What's Changed

• Import Qt elements from qt-niu by @adamltyson in #485

Full Changelog: v1.4.1...v1.5.0

v1.4.1

What's Changed

• Replaced NIU upload action with separate steps by @IgorTatarnikov in #478
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #480
• Use pypa/gh-action-pypi-publish stable release v1 by @lochhh in #481
• Use explicit len(arr)-count instead of just -count to handle count=0 by @matham in #484

New Contributors

• @lochhh made their first contribution in #481

Full Changelog: v1.4.0...v1.4.1

v1.4.0

What's Changed

• Move detection (2d/3d filtering, structure splitting) to PyTorch by @matham in #440
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #467
• Notify slack on scheduled test failure by @IgorTatarnikov in #469
• ensure trained_model is a Path before calling .suffix by @alessandrofelder in #471
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #472
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #474
• Unpin keras by @IgorTatarnikov in #475
• bump headless display action 2->3 by @alessandrofelder in #476

Full Changelog: v1.3.3...v1.4.0

v1.4.0-alpha.0

What's Changed

• Move detection (2d/3d filtering, structure splitting) to PyTorch by @matham in #440

Full Changelog: v1.3.3...v1.4.0alpha0

v1.3.3

What's Changed

• Unpin numpy by @IgorTatarnikov in #452
• Remove x86 macOS runners from the test suite by @IgorTatarnikov in #453
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #455
• Unpin numpy by @adamltyson in #457
• Schedule weekly tests by @IgorTatarnikov in #458
• Pin keras version to 3.5.0 by @IgorTatarnikov in #462
• Allow napari GUI to accept custom weights by @IgorTatarnikov in #460
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #461

Full Changelog: v1.3.2...v1.3.3