Extend LinkML schema with LBNL DOE model card md template coverage#19

Merged

realmarcin merged 47 commits intomainfrom

Nov 23, 2025

Commits on Nov 23, 2025

Extend LinkML schema with 100% KOGUT template coverage for DOE scientific models

realmarcin
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claude
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Fix deprecated GitHub Actions versions in test workflow

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Add KOGUT template source files and update gitignore

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Update src/linkml/modelcards.yaml

realmarcin
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Copilot
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Update src/data/examples/kogut/climate-model-kogut.yaml

realmarcin
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Update src/linkml/modelcards.yaml

realmarcin
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Update src/data/examples/kogut/README.md

realmarcin
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Update src/data/examples/kogut/climate-model-kogut.yaml

realmarcin
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Update src/data/examples/kogut/climate-model-kogut.yaml

realmarcin
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Copilot
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Update src/data/examples/kogut/README.md

realmarcin
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Update src/data/examples/kogut/README.md

realmarcin
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Initial plan
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Initial plan
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Update src/linkml/modelcards.yaml

realmarcin
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Copilot
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Update src/linkml/modelcards.yaml

realmarcin
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Copilot
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Change orcid field from string to uri range for consistency

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Initial plan
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Make training_data_separate and evaluation_data_separate boolean globally

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Fix evaluation_data_separate global slot to be boolean type

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Fix Poetry package configuration and CI installation issues

realmarcin
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claude
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Fix schema path references in about.yaml and Makefile

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Fix test module import errors in test_data.py

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Fix firewall blocking Poetry installation by using pre-installed version

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Install Poetry via pip instead of pre-installed version

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Fix Makefile to use poetry install --no-root

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Fix deploy_documentation.yml to use --no-root flag

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Update Python version from 3.9 to 3.12 in test workflow

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Fix missing --no-root flag in PyPI publish workflow

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Update schema: separate base and extended slots, rename KOGUT to extended template

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Rename kogut directory and files to extended, update all references

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Clarify KOGUT path reference is for original template source

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Update test to look for extended template examples instead of kogut
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Fix CI/CD: Python 3.12, --no-root flags, and pyproject.toml deprecation

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claude
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Fix CI/CD: Python 3.12, --no-root flags, and pyproject.toml deprecation

realmarcin
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Fix CI/CD: Python 3.12, --no-root flags, and pyproject.toml deprecation

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Merge main into schema-extend, keeping 'extended' terminology

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Update PyYAML to 6.0.3 for Python 3.12 compatibility

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Update PyYAML to 6.0.3 for Python 3.12 compatibility

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Update PyYAML to 6.0.3 for Python 3.12 compatibility

realmarcin
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Update PyYAML to 6.0.3 for Python 3.12 compatibility

realmarcin
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Update greenlet to 3.2.4 for Python 3.12 compatibility

realmarcin
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claude
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Update greenlet to 3.2.4 for Python 3.12 compatibility

realmarcin
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Update greenlet to 3.2.4 for Python 3.12 compatibility

realmarcin
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claude
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Update greenlet to 3.2.4 for Python 3.12 compatibility

realmarcin
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Merge pull request #20 from bridge2ai/copilot/sub-pr-19
realmarcin
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Merge pull request #21 from bridge2ai/copilot/sub-pr-19-again
realmarcin
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Merge pull request #22 from bridge2ai/copilot/sub-pr-19-another-one
realmarcin
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