Cramtobam WDL Update

[Patrick-Schlaeger-Broad]

Added an updated CramToBam folder, including a CramToBam WDL along with a README.md with instructions and example for use. The CramToBam WDL was updated from an old WDL made in 2017, which is now bugged. This is fixed in the updated version.

[yueyaog]

Great code improvement. Minor changes are needed.

[yueyaog]

Could you add this to dockstore by adding an entry in dockstore.yml file? @Patrick-Schlaeger-Broad

[Patrick-Schlaeger-Broad]

Could you add this to dockstore by adding an entry in dockstore.yml file? @Patrick-Schlaeger-Broad

Completed! The only issue is that I don't have a test.json file for the testParameterFiles input. I just deleted that section for now, but I don't know if I will need to add one or not for it to show up correctly on Dockstore. @yueyaog

[yueyaog]

Could you add this to dockstore by adding an entry in dockstore.yml file? @Patrick-Schlaeger-Broad

Completed! The only issue is that I don't have a test.json file for the testParameterFiles input. I just deleted that section for now, but I don't know if I will need to add one or not for it to show up correctly on Dockstore. @yueyaog

You could generate it using womtools. Can you add one using womtools input?

[Patrick-Schlaeger-Broad]

Could you add this to dockstore by adding an entry in dockstore.yml file? @Patrick-Schlaeger-Broad

Completed! The only issue is that I don't have a test.json file for the testParameterFiles input. I just deleted that section for now, but I don't know if I will need to add one or not for it to show up correctly on Dockstore. @yueyaog

You could generate it using womtools. Can you add one using womtools input?

I added in a womtools input.json file.