Skip to content

GDC realignment#75

Open
stellaning1120 wants to merge 21 commits intomasterfrom
GDCRealignment
Open

GDC realignment#75
stellaning1120 wants to merge 21 commits intomasterfrom
GDCRealignment

Conversation

@stellaning1120
Copy link
Collaborator

We are requested to process this ticket for GDC realignment.
https://github.com/broadinstitute/TAG/issues/2142

Warp is not maintaining this pipeline anymore. This is an copy from warp and we implanted minor change to RevertSam task from CramToUnmappedBams WDL, because in the fire case we have 296 samples that were aligned on dragen 3.7.8, there was an incompatibility with XQ tag with Picard Tools.

--RESTORE_HARDCLIPS,-RHC false

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant