Redundancy update#425

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xuefzhao wants to merge 26 commits intobroadinstitute:masterfrom

talkowski-lab:redundancy_update

Commits on Jun 10, 2021

Commits on Jun 18, 2021

Update
RCollins13
committed

Commits on Jun 22, 2021

Updates to QC for more efficient VID collection per sample
RCollins13
committed

Commits on Jul 1, 2021

Allow VCF-wide QC plotting to accept VCFs with only allosomes
RCollins13
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Commits on Jul 8, 2021

Subset external benchmarking to contigs of interest
RCollins13
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Commits on Aug 2, 2021

QC updates with XZ IRS
RCollins13
committed

Commits on Sep 18, 2021

Commits on Sep 19, 2021

Commits on Sep 20, 2021

Commits on Sep 21, 2021

Fix compression edge-case for per-sample callset comparison
RCollins13
committed

Commits on Sep 22, 2021

Commits on Sep 27, 2021

Commits on Oct 20, 2021

Add contingency for QC on VCFs prior to cleanVCF step 5
RCollins13
committed

Commits on Oct 25, 2021

Commits on Oct 28, 2021

Commits on Sep 28, 2022

added scripts to remove redundancies
xuefzhao
committed

Commits on Oct 7, 2022

recluster script updated
xuefzhao
committed