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Add optional use of SSD in GenotypeBatch#924

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VJalili wants to merge 2 commits intomainfrom
v-ssd-genotype-batch
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Add optional use of SSD in GenotypeBatch#924
VJalili wants to merge 2 commits intomainfrom
v-ssd-genotype-batch

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@VJalili VJalili commented Feb 26, 2026

This PR adds a flag to the GenotypeBatch workflow that allows switching between HDD and SSD local disk for all the tasks in this workflow.

We have benchmarked using an SSD for this workflow using one batch of ~500 samples.

setting Runtime Cost
HDD 6h 19m $0.69
SSD 3h 51m $0.78

@VJalili VJalili marked this pull request as ready for review February 27, 2026 14:46
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