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Export statistics summary (# of DE features) for each comparison

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#66 In broadinstitute/protigy-v2;

· nmclark2 opened on Jan 26, 2026

Searching and labeling proteins on Volcano plots

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#57 In broadinstitute/protigy-v2;

· cliandouble08 opened on Dec 11, 2025

Support direct import of Condition Setup (.tsv) from Spectronaut

enhancementNew feature or requestNew feature or request

Status: Open.

#56 In broadinstitute/protigy-v2;

· cliandouble08 opened on Dec 11, 2025

Add batch correction module

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#52 In broadinstitute/protigy-v2;

· nmclark2 opened on Dec 5, 2025

Incorporate missing value imputation

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#40 In broadinstitute/protigy-v2;

· nmclark2 opened on Sep 30, 2025

Incorporate INDRA for PPIs

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#39 In broadinstitute/protigy-v2;

· nmclark2 opened on Sep 25, 2025

Add gene symbol conversion

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#31 In broadinstitute/protigy-v2;

· nmclark2 opened on Sep 17, 2025

Integrate LinearModelApp

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#25 In broadinstitute/protigy-v2;

· nmclark2 opened on Aug 14, 2025

Add CV calculation and plots for intensity data

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#10 In broadinstitute/protigy-v2;

· nmclark2 opened on Jun 25, 2025

Add sample filtering based on column (e.g. QC.status)

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#6 In broadinstitute/protigy-v2;

· nmclark2 opened on Jun 5, 2025