Glimpse2LowPassImputation_v0.0.1

0.0.1

2026-02-26 (Date of Last Commit)

• Early draft of the glimpse lowpass imputation pipeline (putting this here to satisfy PR checks for now)

Glimpse2LowPassImputation_develop

0.0.1

2026-02-26 (Date of Last Commit)

• Early draft of the glimpse lowpass imputation pipeline (putting this here to satisfy PR checks for now)

SlideTags_v1.0.8

1.0.8

2026-02-24 (Date of Last Commit)

• Added 2 new outputs to Multiome.wdl: gex_whitelist_used and atac_whitelist_used; these outputs indicate the whitelist used for the gene expression and ATAC pipelines, respectively. This change is provenance-only and introduces no functional changes to pipeline outputs
• Added whitelist provenance tracking to JoinMultiomeBarcodes by storing the GEX and ATAC whitelist paths in the h5ad unstructured metadata (.uns). This change is provenance-only and introduces no functional changes to pipeline outputs

SlideSeq_v3.6.5

3.6.5

2026-02-24 (Date of Last Commit)

• Added 2 new outputs to Multiome.wdl: gex_whitelist_used and atac_whitelist_used; these outputs indicate the whitelist used for the gene expression and ATAC pipelines, respectively. This change is provenance-only and introduces no functional changes to pipeline outputs
• Added whitelist provenance tracking to JoinMultiomeBarcodes by storing the GEX and ATAC whitelist paths in the h5ad unstructured metadata (.uns). This change is provenance-only and introduces no functional changes to pipeline outputs

PairedTag_v2.1.11

2.1.11

2026-02-24 (Date of Last Commit)

• Added 2 new outputs to Multiome.wdl: gex_whitelist_used and atac_whitelist_used; these outputs indicate the whitelist used for the gene expression and ATAC pipelines, respectively. This change is provenance-only and introduces no functional changes to pipeline outputs
• Added whitelist provenance tracking to JoinMultiomeBarcodes by storing the GEX and ATAC whitelist paths in the h5ad unstructured metadata (.uns). This change is provenance-only and introduces no functional changes to pipeline outputs

Optimus_v8.0.6

8.0.6

2026-02-24 (Date of Last Commit)

• Added 1 new output to Optimus.wdl: whitelist_input_used; this output indicates the whitelist used. This change is provenance-only and introduces no functional changes to pipeline outputs
• Added whitelist provenance tracking to OptimusH5adGeneration and SingleNucleusOptimusH5adOutput by storing the whitelist path in the h5ad unstructured metadata (.uns). This change is provenance-only and introduces no functional changes to pipeline outputs

Multiome_v6.1.5

6.1.5

2026-02-24 (Date of Last Commit)

• Added 2 new outputs to Multiome.wdl: gex_whitelist_used and atac_whitelist_used; these outputs indicate the whitelist used for the gene expression and ATAC pipelines, respectively. This change is provenance-only and introduces no functional changes to pipeline outputs
• Added whitelist provenance tracking to JoinMultiomeBarcodes by storing the GEX and ATAC whitelist paths in the h5ad unstructured metadata (.uns). This change is provenance-only and introduces no functional changes to pipeline outputs

MultiSampleSmartSeq2SingleNucleus_v2.2.5

2.2.5

2026-02-24 (Date of Last Commit)

• Added 2 new outputs to Multiome.wdl: gex_whitelist_used and atac_whitelist_used; these outputs indicate the whitelist used for the gene expression and ATAC pipelines, respectively. This change is provenance-only and introduces no functional changes to pipeline outputs
• Added whitelist provenance tracking to JoinMultiomeBarcodes by storing the GEX and ATAC whitelist paths in the h5ad unstructured metadata (.uns). This change is provenance-only and introduces no functional changes to pipeline outputs

SlideTags_develop

1.0.8

2026-02-24 (Date of Last Commit)

• Added 2 new outputs to Multiome.wdl: gex_whitelist_used and atac_whitelist_used; these outputs indicate the whitelist used for the gene expression and ATAC pipelines, respectively. This change is provenance-only and introduces no functional changes to pipeline outputs
• Added whitelist provenance tracking to JoinMultiomeBarcodes by storing the GEX and ATAC whitelist paths in the h5ad unstructured metadata (.uns). This change is provenance-only and introduces no functional changes to pipeline outputs

SlideSeq_develop

3.6.5

2026-02-24 (Date of Last Commit)

• Added 2 new outputs to Multiome.wdl: gex_whitelist_used and atac_whitelist_used; these outputs indicate the whitelist used for the gene expression and ATAC pipelines, respectively. This change is provenance-only and introduces no functional changes to pipeline outputs
• Added whitelist provenance tracking to JoinMultiomeBarcodes by storing the GEX and ATAC whitelist paths in the h5ad unstructured metadata (.uns). This change is provenance-only and introduces no functional changes to pipeline outputs