Upgrade dependencies: Pandas 3.0, Django 5.2.10, and ruff toolchain

[copelco]

Summary

• Upgrade Python deps, including Pandas 3.0 and Django 5.2.10, along with many others using uv sync --upgrade
• Replaced linting/formatting tools: Migrated from black, isort, and flake8 to ruff for faster linting and formatting
• Updated pre-commit hooks: Configure ruff-check (with --fix) and ruff-format hooks to replace individual black, isort, and flake8 hooks
• Added JupyterLab: Added jupyterlab>=4.5.3 as a dev dependency for notebook development

refs #369 #380

Local testing

• Test suite runs ✅
• Deploy runs ✅
• Imported latest data with uv run manage.py import_nc --dest $PWD/ncdata --noprime successfully ✅
• Loaded key pages appear to match without errors ✅ :

[copelco]

Upgrade output:

> uv sync --upgrade         
Resolved 153 packages in 1.08s
Prepared 82 packages in 2.75s
Uninstalled 83 packages in 3.99s
Installed 82 packages in 1.36s
 - ansible==11.9.0
 + ansible==13.2.0
 - ansible-core==2.18.8
 + ansible-core==2.20.1
 - anyio==4.10.0
 + anyio==4.12.1
 - asgiref==3.9.1
 + asgiref==3.11.0
 - asttokens==3.0.0
 + asttokens==3.0.1
 - attrs==25.3.0
 + attrs==25.4.0
 - awscli==1.42.16
 + awscli==1.44.25
 - billiard==4.2.1
 + billiard==4.2.4
 - black==25.1.0
 + black==26.1.0
 - boto3==1.40.16
 + boto3==1.42.35
 - botocore==1.40.16
 + botocore==1.42.35
 - brotli==1.1.0
 + brotli==1.2.0
 - cachetools==5.5.2
 - celery==5.5.3
 + celery==5.6.2
 - census==0.8.24
 + census==0.8.25
 - certifi==2025.8.3
 + certifi==2026.1.4
 - cffi==1.17.1
 + cffi==2.0.0
 - cfgv==3.4.0
 + cfgv==3.5.0
 - charset-normalizer==3.4.3
 + charset-normalizer==3.4.4
 - click==8.2.1
 + click==8.3.1
 - coverage==7.10.5
 + coverage==7.13.2
 - cryptography==45.0.6
 + cryptography==46.0.3
 - dj-database-url==3.0.1
 + dj-database-url==3.1.0
 - django==5.2.5
 + django==5.2.10
 - django-ckeditor-5==0.2.18
 + django-ckeditor-5==0.2.19
 - django-click==2.4.1
 + django-click==2.5.0
 - django-crispy-forms==2.4
 + django-crispy-forms==2.5
 - django-debug-toolbar==6.0.0
 + django-debug-toolbar==6.2.0
 - django-filter==25.1
 + django-filter==25.2
 - django-pgviews-redux==0.11.0
 + django-pgviews-redux==1.1.0
 - executing==2.2.0
 + executing==2.2.1
 - faker==37.5.3
 + faker==40.1.2
 - filelock==3.19.1
 + filelock==3.20.3
 - google-auth==2.40.3
 + google-auth==2.48.0
 - identify==2.6.13
 + identify==2.6.16
 - idna==3.10
 + idna==3.11
 - iniconfig==2.1.0
 + iniconfig==2.3.0
 - invoke==2.2.0
 + invoke==2.2.1
 - ipython==9.4.0
 + ipython==9.9.0
 - isort==6.0.1
 + isort==7.0.0
 - jellyfish==1.2.0
 + jellyfish==1.2.1
 - jmespath==1.0.1
 + jmespath==1.1.0
 - jsonschema==4.25.1
 + jsonschema==4.26.0
 - jsonschema-specifications==2025.4.1
 + jsonschema-specifications==2025.9.1
 - kombu==5.5.4
 + kombu==5.6.2
 - kubernetes-validate==1.32.0
 + kubernetes-validate==1.33.1
 - markupsafe==3.0.2
 + markupsafe==3.0.3
 - matplotlib-inline==0.1.7
 + matplotlib-inline==0.2.1
 - nodeenv==1.9.1
 + nodeenv==1.10.0
 - numpy==2.3.2
 + numpy==2.4.1
 - packaging==25.0
 + packaging==26.0
 - pandas==2.3.2
 + pandas==3.0.0
 - pathspec==0.12.1
 + pathspec==1.0.4
 - pillow==11.3.0
 + pillow==12.1.0
 - platformdirs==4.3.8
 + platformdirs==4.5.1
 - pre-commit==4.3.0
 + pre-commit==4.5.1
 - prompt-toolkit==3.0.51
 + prompt-toolkit==3.0.52
 - psycopg==3.2.9
 + psycopg==3.3.2
 - pyasn1==0.6.1
 + pyasn1==0.6.2
 - pycparser==2.22
 + pycparser==3.0
 - pytest==8.4.1
 + pytest==9.0.2
 - pytest-cov==6.2.1
 + pytest-cov==7.0.0
 + pytokens==0.4.0
 - pytz==2025.2
 - pyyaml==6.0.2
 + pyyaml==6.0.3
 - redis==6.4.0
 + redis==7.1.0
 - referencing==0.36.2
 + referencing==0.37.0
 - resolvelib==1.0.1
 + resolvelib==1.2.1
 - rpds-py==0.27.0
 + rpds-py==0.30.0
 - s3transfer==0.13.1
 + s3transfer==0.16.0
 - sniffio==1.3.1
 - sphinx-autobuild==2024.10.3
 + sphinx-autobuild==2025.8.25
 - sqlparse==0.5.3
 + sqlparse==0.5.5
 - starlette==0.47.3
 + starlette==0.52.1
 - troposphere==4.9.3
 + troposphere==4.9.6
 - typing-extensions==4.14.1
 + typing-extensions==4.15.0
 - tzdata==2025.2
 + tzdata==2025.3
 + tzlocal==5.3.1
 - uvicorn==0.35.0
 + uvicorn==0.40.0
 - virtualenv==20.34.0
 + virtualenv==20.36.1
 - watchfiles==1.1.0
 + watchfiles==1.1.1
 - wcwidth==0.2.13
 + wcwidth==0.5.0
 - websocket-client==1.8.0
 + websocket-client==1.9.0
 - websockets==15.0.1
 + websockets==16.0
 - whitenoise==6.9.0
 + whitenoise==6.11.0