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1. Updated roots version, 2. Added options paramenter outdir for custom configuration output #3

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1. Updated roots version, 2. Added options paramenter outdir for custom configuration output #3

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davidgustys
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  1. Updated roots version, 2. Added options paramenter outdir for custom configuration output

@jescalan
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Sorry this is a little late! Happy to merge this, but could you rebase on top of master? It's not merge-able at the moment

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@davidgustys @jescalan