Remove deprecated stub_frames parameter from ophys interfaces

[h-mayorquin]

Removed the stub_frames parameter (deprecated since February 2026) from all ophys interfaces. Users should use stub_samples instead.

Affected classes: BaseImagingExtractorInterface, BaseSegmentationExtractorInterface, BrukerTiffMultiPlaneConverter, BrukerTiffSinglePlaneConverter, MiniscopeConverter, Suite2pSegmentationInterface, MinianSegmentationInterface, _MiniscopeMultiRecordingInterface

[alessandratrapani]

LGTM

[codecov]

Codecov Report

❌ Patch coverage is 48.07692% with 54 lines in your changes missing coverage. Please review.
✅ Project coverage is 80.76%. Comparing base (b630a43) to head (48e1c1b).
⚠️ Report is 3 commits behind head on main.

Files with missing lines	Patch %	Lines
src/neuroconv/tools/hdmf.py	23.80%	32 Missing ⚠️
...oconv/datainterfaces/behavior/video/video_utils.py	45.45%	12 Missing ⚠️
...roiextractors/imagingextractordatachunkiterator.py	80.95%	4 Missing ⚠️
...erface/spikeinterfacerecordingdatachunkiterator.py	66.66%	4 Missing ⚠️
...datainterfaces/ophys/minian/miniandatainterface.py	0.00%	1 Missing ⚠️
...tainterfaces/ophys/suite2p/suite2pdatainterface.py	0.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1676      +/-   ##
==========================================
- Coverage   81.08%   80.76%   -0.32%     
==========================================
  Files         160      160              
  Lines       12574    12635      +61     
==========================================
+ Hits        10195    10205      +10     
- Misses       2379     2430      +51     

Flag	Coverage Δ
unittests	80.76% <48.07%> (-0.32%)	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines	Coverage Δ
...ainterfaces/ophys/baseimagingextractorinterface.py	80.00% <100.00%> (+2.98%)	⬆️
...rfaces/ophys/basesegmentationextractorinterface.py	80.00% <100.00%> (+0.68%)	⬆️
...interfaces/ophys/brukertiff/brukertiffconverter.py	94.44% <ø> (+6.20%)	⬆️
...tainterfaces/ophys/miniscope/miniscopeconverter.py	95.00% <100.00%> (-0.24%)	⬇️
...s/ophys/miniscope/miniscopeimagingdatainterface.py	77.91% <ø> (-0.14%)	⬇️
...datainterfaces/ophys/minian/miniandatainterface.py	64.28% <0.00%> (ø)
...tainterfaces/ophys/suite2p/suite2pdatainterface.py	71.73% <0.00%> (ø)
...roiextractors/imagingextractordatachunkiterator.py	94.20% <80.95%> (-5.80%)	⬇️
...erface/spikeinterfacerecordingdatachunkiterator.py	88.88% <66.66%> (-11.12%)	⬇️
...oconv/datainterfaces/behavior/video/video_utils.py	89.02% <45.45%> (-6.84%)	⬇️
... and 1 more

... and 1 file with indirect coverage changes

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