Skip to content

Remove iterator_type v1 and rate in trace metadata deprecations#1679

Merged
h-mayorquin merged 6 commits intomainfrom
remove-iterator-v1-and-rate-deprecations
Mar 9, 2026
Merged

Remove iterator_type v1 and rate in trace metadata deprecations#1679
h-mayorquin merged 6 commits intomainfrom
remove-iterator-v1-and-rate-deprecations

Conversation

@h-mayorquin
Copy link
Collaborator

@h-mayorquin h-mayorquin commented Mar 3, 2026

Remove March 2026 deprecated features in roiextractors

  • Removed iterator_type='v1' support from _imaging_frames_to_hdmf_iterator.
  • Removed support for passing rate in trace metadata for fluorescence traces. The rate is now always calculated automatically from the segmentation extractor's timestamps or sampling frequency.
  • Removed unused DataChunkIterator imports from both source and test files.
  • Removed the test_deprecated_v1_iterator_two_photon test.

h-mayorquin and others added 2 commits March 2, 2026 21:42
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
@h-mayorquin h-mayorquin self-assigned this Mar 3, 2026
@h-mayorquin h-mayorquin requested a review from pauladkisson March 5, 2026 06:39
Copy link
Member

@pauladkisson pauladkisson left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looks good.

@h-mayorquin h-mayorquin enabled auto-merge (squash) March 9, 2026 07:16
@h-mayorquin h-mayorquin disabled auto-merge March 9, 2026 15:20
@h-mayorquin h-mayorquin enabled auto-merge (squash) March 9, 2026 17:20
@h-mayorquin h-mayorquin merged commit b9885a4 into main Mar 9, 2026
24 checks passed
@h-mayorquin h-mayorquin deleted the remove-iterator-v1-and-rate-deprecations branch March 9, 2026 17:57
@codecov
Copy link

codecov bot commented Mar 9, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 80.75%. Comparing base (b630a43) to head (4a5a2dc).
⚠️ Report is 4 commits behind head on main.

Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##             main    #1679      +/-   ##
==========================================
- Coverage   81.08%   80.75%   -0.33%     
==========================================
  Files         160      160              
  Lines       12574    12622      +48     
==========================================
- Hits        10195    10193       -2     
- Misses       2379     2429      +50     
Flag Coverage Δ
unittests 80.75% <100.00%> (-0.33%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
src/neuroconv/tools/roiextractors/roiextractors.py 75.57% <100.00%> (-1.47%) ⬇️
🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants