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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 144 46

Repositories

Showing 10 of 115 repositories
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    cbg-ethz/pangolin’s past year of commit activity
    Shell 7 3 0 1 Updated Feb 23, 2026
  • WisePulse Public

    WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.

    cbg-ethz/WisePulse’s past year of commit activity
    Rust 5 MIT 0 27 2 Updated Feb 23, 2026
  • sr2silo Public

    Wrangling short-read sequencing data for import into SILO

    cbg-ethz/sr2silo’s past year of commit activity
    Python 1 MIT 1 4 3 Updated Feb 23, 2026
  • scDEF Public

    Deep exponential families for single-cell data.

    cbg-ethz/scDEF’s past year of commit activity
    Python 20 1 0 0 Updated Feb 20, 2026
  • SC-Bulk-Domain-Adaptation Public
    cbg-ethz/SC-Bulk-Domain-Adaptation’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 16, 2026
  • RSV-wastewater-V-pipe Public

    Wastewater-derived Respiratory Syncytial Virus data analysis

    cbg-ethz/RSV-wastewater-V-pipe’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Feb 11, 2026
  • v-pipe-scout Public

    Rapid Viral Variant Exploration and Detection - Interactive WebApp

    cbg-ethz/v-pipe-scout’s past year of commit activity
    Python 0 MIT 0 7 1 Updated Feb 1, 2026
  • covvfit Public

    Fitness estimates of SARS-CoV-2 variants

    cbg-ethz/covvfit’s past year of commit activity
    Python 2 MIT 1 3 11 Updated Feb 1, 2026
  • cowwid Public

    Procedure used for the surveillance of SARS-CoV-2, RSV and Influenza genomic variants in wastewater.

    cbg-ethz/cowwid’s past year of commit activity
    Jupyter Notebook 7 0 3 3 Updated Jan 30, 2026
  • SCITE-RNA Public
    cbg-ethz/SCITE-RNA’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 1 1 0 Updated Jan 28, 2026
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