Scripts for preprocessing

[yangle293]

Hello,

Thank you for sharing the resources associated with this work. I am very interested in the paper and would like to reproduce the results from scratch.

Could you please provide the preprocessing scripts used for the mm16 and mm34 samples? If sharing the full scripts is not feasible, any additional details (some I cannot find in Appendix) about the preprocessing pipeline would be extremely helpful—for example:

• Which human reference genome build (and annotation version) was used
• Key parameters for variant calling

Thank you very much for your time and for making this work available.

Best regards,
Le

[znorio]

Sorry for the late response. The preprocessing is following the PhylinSic variant calling pipeline. We used GRCh38 as reference genome.