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cfe-lab / MiCall Public

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Implement sample merging#1026

Draft

Donaim wants to merge 11 commits intomastercfe-lab/MiCall:masterfrom

merge_samplescfe-lab/MiCall:merge_samplesCopy head branch name to clipboard

Conversation Commits11 (11)Checks Files changed

Draft

Implement sample merging#1026
Donaim wants to merge 11 commits intomasterfrom
merge_samples

Commits

Commits on Feb 14, 2024

Make bad_cycles.csv argument optional in trim_fastqs.py
Donaim
committed
Add merge_samples command to micall_docker.py
Donaim
committed
Factor merge_fastqs from micall_docker.py into a separate script
Donaim
committed
Add Singularity entry for the new merge_fastqs pipeline
Donaim
committed
Fix input arguments to merge_fastqs in Singularity file
Donaim
committed
Add more tests for merge_fastqs.py script
Donaim
committed
Ensure that output directories exist in merge_fastqs.py
Donaim
committed
Fix typo in merge_fastqs.py
Donaim
committed
Compress final outputs in merge_samples when --unzip is not used
Donaim
committed

Commits on Feb 16, 2024

Merge fastqs: support arbitrary number of inputs
Donaim
committed
Merge fastqs: add documentation
Donaim
committed

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