v0.3.4

What's Changed

• updating to latest LinkML and switching to uv build system by @cmungall in #47

1. Build System Improvements

• Modern tooling: Migration to uv is excellent - faster, more reliable dependency resolution
• Proper dependency groups: Clear separation between runtime and dev dependencies
• Dynamic versioning: Uses uv-dynamic-versioning for git-based version management
• Build system modernization: Switched from setuptools to hatchling with proper configuration

2. Schema Enhancements

• Comprehensive mappings: Added numerous exact_mappings to external ontologies (CHEBI, SIO, BFO)
• InChI support expansion: Added detailed InChI sublayer slots for better stereochemistry support:
  • inchi_atom_connections_sublayer
  • inchi_hydrogen_connections_sublayer
  • inchi_charge_sublayer
  • inchi_stereochemical_* sublayers
• Improved semantic alignment: Better integration with standard chemical ontologies
• Enhanced reaction modeling: Added class_uri and mappings for Reaction class

Full Changelog: v0.3.3...v0.3.4

v0.3.3

What's Changed

• AI setup by @cmungall in #40
• Add @realmarcin to ai-controllers.json by @dragon-ai-agent in #43
• Adding reaction type enum by @cmungall and @claude in #37
• Add optional context fields for pKa values by @dragon-ai-agent in #41

Full Changelog: v0.3.2...v0.3.3

v0.3.2

What's Changed

• Add AI controller documentation (closes #32) by @dragon-ai-agent in #33
• Add examples for all classes in schema (Issue #28) by @dragon-ai-agent in #31
• Add water solubility and pKa ionization constant properties to ChemROF schema by @dragon-ai-agent and @realmarcin in #36

Full Changelog: v0.3.1...v0.3.2

v0.3.1

What's Changed

• smirks by @cmungall in #26
• Add berkelium (Bk) chemical element example by @dragon-ai-agent in #30

New Contributors

• @dragon-ai-agent made their first contribution in #30

Full Changelog: v0.3.0...v0.3.1

v0.3.0

What's Changed

• fixing header by @cmungall in #8
• Fixes for FIX vocabulary by @cmungall in #24
• Use the official UniProt PURLs, for the usual very good reasons by @JervenBolleman in #22
• Propose has_major_microspecies_at_pH7.3 by @JervenBolleman in #20
• Regenerated downstream artefacts. by @cmungall in #25

New Contributors

• @JervenBolleman made their first contribution in #22

Full Changelog: v0.2.0...v0.3.0

v0.2.0

Full Changelog: v0.1.0...v0.2.0

v0.1.0

What's Changed

• google analytics by @cmungall in #5

New Contributors

• @cmungall made their first contribution in #3

Full Changelog: https://github.com/chemkg/chemrof/commits/v0.1.0