Save Or Load Embedding
Currently, the steps below can be followed to save/load computed embeddings. A future release of VizBin will include ways to easily save and restore results (s. a. #11).
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Double-click on the Status-line (left to the progress bar) or open the log file in your .vizbin folder. |
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Search for a line starting with Running command:, copy the directory path indicated there and go to that directory. |
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Copy the points.txt file to a destination of your choice or share it with colleagues. This file contains the two-dimensional coordinates of the computed embedding. It is suggested that you rename so as to match the name of the input FASTA file that was used to generate this embedding. |
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Here, we use the two-dimensional coordinates of the previously computed embedding stored in points.txt. However, this file can be named in any other way and should probably match the name of the input FASTA file used to generate this embedding.
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| Load the FASTA file that was used initially to generate this particular embedding. For details on this, please see the start of the tutorial. It is important to assure that the points file matches the FASTA file. |  |
Click on Show additional options and specify your points.txt. |
 
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Click on Start to visualize the precomputed embedding directly. No recomputation is performed. |
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| Progress with your cluster-selection as detailed in the tutorial. |  |
