This repository contains code used for data analysis in the 1000 spider project, carried out as a part of the course Applied Bioinformatics at Uppsala University during the 2024 autumn semester. The project investigates expression patterns of orthologous genes using tissue-specific bulk expression data from spider species Larinioides sclopetarius and Trichonephila clavata, and single-cell RNA sequencing data from Trichonephila clavata and Trichonephila clavipes.
The code contains local paths and references to data files that we can't publish. As such, the main purpose of this repository is not reproducibility, but method transparency.