Skip to content

Update cool-seq-tool init script #25

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
theferrit32 merged 1 commit into from
Sep 5, 2025
+2 −2
Merged

Update cool-seq-tool init script #25

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions clinvar_gk_pilot/main.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -389,10 +389,10 @@ def partition_file_lines_gz(local_file_path_gz: str, partitions: int) -> List[st
def initialize_variation_normalizer_ref_data():
"""Download and import the variation normalizer reference data script at runtime"""
# URL to the script
script_url = "https://raw.githubusercontent.com/GenomicMedLab/variation-normalizer-manuscript/issue-116/analysis/download_cool_seq_tool_files.py"
script_url = "https://raw.githubusercontent.com/GenomicMedLab/variation-normalizer-manuscript/a5b4f40e696c3c607e770e48e66efcf03a56336f/analysis/download_cool_seq_tool_files.py"

# Download the script
response = requests.get(script_url, timeout=30)
response = requests.get(script_url, timeout=10)
response.raise_for_status()

# Create a temporary file and write the script content
Expand Down