TCGA_GTEx

Date: 11/01/2020

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1. Data source

• tcga_RSEM_gene_tpm.gz 

• TCGA_phenotype_denseDataOnlyDownload.tsv.gz

• gtex_RSEM_gene_tpm.gz 

• GTEX_phenotpye.gz 

• gencode.v23.annotation.gene.probemap

2. Annotate Samples from TCGA and GTEx

code

3. Extract gene of interest

code

4. Visualize gene expression

code

a. boxplot

b. violinplot