coding-for-reproducible-research · liamjberrisford · Jul 31, 2025 · Jul 31, 2025 · Jul 31, 2025 · Jul 31, 2025
diff --git a/_static/multiple_regression_hyperplane.html b/_static/multiple_regression_hyperplane.html
diff --git a/_static/multiple_regression_hyperplane_2.html b/_static/multiple_regression_hyperplane_2.html
diff --git a/cfrr_program_details/code_of_conduct_violations.ipynb b/cfrr_program_details/code_of_conduct_violations.ipynb
@@ -8,7 +8,7 @@
     "# Report Code of Conduct Violations\n",
     "If you have recently experienced an incident violating the CfRR Code of Conduct, please fill out the form below. \n",
     "\n",
-    "<iframe width=\"100%\" height=\"1000px\" src=\"https://forms.office.com/Pages/ResponsePage.aspx?id=d10qkZj77k6vMhM02PBKU84YwThO-BpArj9MrG7uxJxUNFRZWkxBWUJEVzFaWUczNUpJSlMxSFVLTiQlQCN0PWcu&embed=true\" frameborder=\"0\" marginwidth=\"0\" marginheight=\"0\" style=\"border: none;\" allowfullscreen webkitallowfullscreen mozallowfullscreen msallowfullscreen> </iframe>"
+    "<iframe width=\"100%\" height=\"1000px\" title=\"Code of Conduct Violations Form\" src=\"https://forms.office.com/Pages/ResponsePage.aspx?id=d10qkZj77k6vMhM02PBKU84YwThO-BpArj9MrG7uxJxUNFRZWkxBWUJEVzFaWUczNUpJSlMxSFVLTiQlQCN0PWcu&embed=true\" frameborder=\"0\" marginwidth=\"0\" marginheight=\"0\" style=\"border: none;\" allowfullscreen webkitallowfullscreen mozallowfullscreen msallowfullscreen> </iframe>"
    ]
   },
   {

diff --git a/cfrr_program_details/course_feedback.ipynb b/cfrr_program_details/course_feedback.ipynb
@@ -8,7 +8,7 @@
     "# Course Feedback\n",
     "If you have recently attended a Coding for Reproducible Research (CfRR) course, please fill out the following form to provide us with insight into how the course is being received by attendees. Having documented information about the quality of the CfRR courses is key to improving our course offer.\n",
     "\n",
-    "<iframe width=\"100%\" height=\"2450px\" src=\"https://forms.office.com/Pages/ResponsePage.aspx?id=d10qkZj77k6vMhM02PBKU1p5IkKpVbtNkGlRxe_xSUNUNERTSEY1SDRTTzBWSVQ3VkpBM0QyREI5SC4u&embed=true\" frameborder=\"0\" marginwidth=\"0\" marginheight=\"0\" style=\"border: none;\" allowfullscreen webkitallowfullscreen mozallowfullscreen msallowfullscreen> </iframe>"
+    "<iframe width=\"100%\" height=\"2450px\" title=\"Course Feedback Form\" src=\"https://forms.office.com/Pages/ResponsePage.aspx?id=d10qkZj77k6vMhM02PBKU1p5IkKpVbtNkGlRxe_xSUNUNERTSEY1SDRTTzBWSVQ3VkpBM0QyREI5SC4u&embed=true\" frameborder=\"0\" marginwidth=\"0\" marginheight=\"0\" style=\"border: none;\" allowfullscreen webkitallowfullscreen mozallowfullscreen msallowfullscreen> </iframe>"
    ]
   },
   {

diff --git a/contributing/community.ipynb b/contributing/community.ipynb
@@ -32,7 +32,7 @@
    "metadata": {},
    "source": [
     "## Sign-up Form \n",
-    "<iframe width=\"100%\" height=\"1000px\" src=\"https://forms.cloud.microsoft/Pages/ResponsePage.aspx?id=d10qkZj77k6vMhM02PBKU-oxqLMQ8w1AowxZDWbXZRhUNFJHMDBEVUVCV1VXNlk1U09OQ0VVNFhOMi4u&embed=true\" frameborder=\"0\" marginwidth=\"0\" marginheight=\"0\" style=\"border: none; max-width:100%; max-height:100vh\" allowfullscreen webkitallowfullscreen mozallowfullscreen msallowfullscreen> </iframe>"
+    "<iframe width=\"100%\" height=\"1000px\" title=\"Research Coding Community (RCC) Signup Form\" src=\"https://forms.cloud.microsoft/Pages/ResponsePage.aspx?id=d10qkZj77k6vMhM02PBKU-oxqLMQ8w1AowxZDWbXZRhUNFJHMDBEVUVCV1VXNlk1U09OQ0VVNFhOMi4u&embed=true\" frameborder=\"0\" marginwidth=\"0\" marginheight=\"0\" style=\"border: none; max-width:100%; max-height:100vh\" allowfullscreen webkitallowfullscreen mozallowfullscreen msallowfullscreen> </iframe>"
    ]
   },
   {

diff --git a/contributing/suggestions_form.ipynb b/contributing/suggestions_form.ipynb
@@ -15,7 +15,7 @@
     "\n",
     "The Coding for Reproducible Research is a constantly evolving piece of work, and we are keen to develop the programme in response to community feedback to ensure we meet the needs of those engaging with the workshops. As such, if there is anything you would like to see included as part of the programme, please fill out the form below to let us know. \n",
     "\n",
-    "<iframe width=\"100%\" height=\"1000px\" src=\"https://forms.office.com/Pages/ResponsePage.aspx?id=d10qkZj77k6vMhM02PBKU1p5IkKpVbtNkGlRxe_xSUNUQUtYQTAyRlFCMkhONVRONlMzRlQ4SEU3WS4u&embed=true\" frameborder=\"0\" marginwidth=\"0\" marginheight=\"0\" style=\"border: none; max-width:100%; max-height:200vh\" allowfullscreen webkitallowfullscreen mozallowfullscreen msallowfullscreen> </iframe>"
+    "<iframe width=\"100%\" height=\"1000px\" title=\"Feedback Form\" src=\"https://forms.office.com/Pages/ResponsePage.aspx?id=d10qkZj77k6vMhM02PBKU1p5IkKpVbtNkGlRxe_xSUNUQUtYQTAyRlFCMkhONVRONlMzRlQ4SEU3WS4u&embed=true\" frameborder=\"0\" marginwidth=\"0\" marginheight=\"0\" style=\"border: none; max-width:100%; max-height:200vh\" allowfullscreen webkitallowfullscreen mozallowfullscreen msallowfullscreen> </iframe>"
    ]
   },
   {
@@ -31,6 +31,14 @@
    },
    "outputs": [],
    "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "5c7c55c1-6902-47d8-82d0-1a499011b34a",
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {

diff --git a/individual_modules/introduction_to_machine_learning/1_linear_regression.ipynb b/individual_modules/introduction_to_machine_learning/1_linear_regression.ipynb
diff --git a/individual_modules/parallel_computing/multiprocessing_cpu.ipynb b/individual_modules/parallel_computing/multiprocessing_cpu.ipynb
@@ -37,7 +37,7 @@
    "source": [
     "### The multithreading example\n",
     "\n",
-    "[Download complete threaded cpu_bound example file](complete_files/multithreading_cpu_bound_complete.py)"
+    "[Download complete threaded cpu_bound example file](complete_files/multiprocessing_cpu_bound_complete.py)"
    ]
   },
   {
@@ -68,7 +68,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.13.1"
+   "version": "3.9.19"
   }
  },
  "nbformat": 4,

diff --git a/short_courses/r_environments.ipynb b/short_courses/r_environments.ipynb
@@ -8,7 +8,7 @@
     "\n",
     "```{card}\n",
     "\n",
-    "<div class=\"alert alert-block\" style=\"background-color: #f2f2f2;\">\n",
+    "<div class=\"alert alert-block\" style=\"background-color: #ffffff; border: 1px solid #ccc; padding: 1em; border-radius: 8px;\">\n",
     "\n",
     "**Author:** Amy Heather (GitHub: [amyheather](https://github.com/amyheather), ORCID: [0000-0002-6596-3479](https://orcid.org/0000-0002-6596-3479)).\n",
     "\n",

diff --git a/where_is_my_understanding/quizes/regression_analysis_with_R.json b/where_is_my_understanding/quizes/regression_analysis_with_R.json
@@ -1,6 +1,6 @@
 [
     {
-        "question": "Which of these are reasons to do regression analysis? Select all that apply.",
+        "question": "Which of these are reasons to do regression analysis?",
         "type": "many_choice",
         "answers": [
             {
@@ -9,12 +9,7 @@
                 "feedback": "Incorrect."
             },
             {
-                "answer": "Making predictions",
-                "correct": true,
-                "feedback": "Correct."
-            },
-            {
-                "answer": "Hypothesis testing",
+                "answer": "Making predictions and Hypothesis testing",
                 "correct": true,
                 "feedback": "Correct."
             },
@@ -62,7 +57,7 @@
             },
             {
                 "answer": "The mean of the outcome when all predictor variables equal 1.",
-                "correct": true,
+                "correct": false,
                 "feedback": "Correct."
             }
         ]
@@ -197,12 +192,7 @@
         "type": "many_choice",
         "answers": [
             {
-                "answer": "$y ~ 1",
-                "correct": true,
-                "feedback": "Correct."
-            },
-            {
-                "answer": "$y ~ age + sex",
+                "answer": "$y ~ 1, $y ~ education_years + age, $y ~ age + sex",
                 "correct": true,
                 "feedback": "Correct."
             },
@@ -211,11 +201,6 @@
                 "correct": false,
                 "feedback": "Incorrect."
             },
-            {
-                "answer": "$y ~ education_years + age",
-                "correct": true,
-                "feedback": "Correct."
-            },
             {
                 "answer": "$y ~ age + sex + education_years$",
                 "correct": false,

diff --git a/where_is_my_understanding/quizes/using_markdown_in_python.json b/where_is_my_understanding/quizes/using_markdown_in_python.json
@@ -207,32 +207,6 @@
             }
         ]
     },
-    {
-        "question": "Which of the following is a valid way to insert an image in Markdown?",
-        "type": "many_choice",
-        "answers": [
-            {
-                "answer": "[image](url)",
-                "correct": false,
-                "feedback": "Incorrect. This is link syntax, not image."
-            },
-            {
-                "answer": "<img src=\"url\">",
-                "correct": false,
-                "feedback": "Incorrect. This is HTML, not Markdown."
-            },
-            {
-                "answer": "![alt text](url)",
-                "correct": true,
-                "feedback": "Correct. This is the right Markdown image syntax."
-            },
-            {
-                "answer": "{image: url}",
-                "correct": false,
-                "feedback": "Incorrect. Not valid Markdown."
-            }
-        ]
-    },
     {
         "question": "What is the recommended way to save and export a Jupyter Notebook as a static, shareable web page?",
         "type": "many_choice",

diff --git a/where_is_my_understanding/using_markdown_in_python.ipynb b/where_is_my_understanding/using_markdown_in_python.ipynb
@@ -17,7 +17,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": 3,
    "id": "87f61215-5388-45ca-9f09-05bff13081bd",
    "metadata": {
     "editable": true,
@@ -32,13 +32,13 @@
     {
      "data": {
       "text/html": [
-       "<div id=\"KwBgXCiVPTed\" data-shufflequestions=\"False\"\n",
+       "<div id=\"yAJbdECaRGYq\" data-shufflequestions=\"False\"\n",
        "               data-shuffleanswers=\"True\"\n",
        "               data-preserveresponses=\"false\"\n",
        "               data-numquestions=\"1000000\"\n",
        "               data-maxwidth=\"600\"\n",
        "               style=\"border-radius: 10px; text-align: left\"> <style>\n",
-       "#KwBgXCiVPTed {\n",
+       "#yAJbdECaRGYq {\n",
        "   --jq-multiple-choice-bg: #6f78ffff;\n",
        "   --jq-mc-button-bg: #fafafa;\n",
        "   --jq-mc-button-border: #e0e0e0e0;\n",
@@ -220,7 +220,7 @@
     {
      "data": {
       "application/javascript": [
-       "var questionsKwBgXCiVPTed=[\n",
+       "var questionsyAJbdECaRGYq=[\n",
        "    {\n",
        "        \"question\": \"What is a markup language primarily used for?\",\n",
        "        \"type\": \"many_choice\",\n",
@@ -430,32 +430,6 @@
        "        ]\n",
        "    },\n",
        "    {\n",
-       "        \"question\": \"Which of the following is a valid way to insert an image in Markdown?\",\n",
-       "        \"type\": \"many_choice\",\n",
-       "        \"answers\": [\n",
-       "            {\n",
-       "                \"answer\": \"[image](url)\",\n",
-       "                \"correct\": false,\n",
-       "                \"feedback\": \"Incorrect. This is link syntax, not image.\"\n",
-       "            },\n",
-       "            {\n",
-       "                \"answer\": \"<img src=\\\"url\\\">\",\n",
-       "                \"correct\": false,\n",
-       "                \"feedback\": \"Incorrect. This is HTML, not Markdown.\"\n",
-       "            },\n",
-       "            {\n",
-       "                \"answer\": \"![alt text](url)\",\n",
-       "                \"correct\": true,\n",
-       "                \"feedback\": \"Correct. This is the right Markdown image syntax.\"\n",
-       "            },\n",
-       "            {\n",
-       "                \"answer\": \"{image: url}\",\n",
-       "                \"correct\": false,\n",
-       "                \"feedback\": \"Incorrect. Not valid Markdown.\"\n",
-       "            }\n",
-       "        ]\n",
-       "    },\n",
-       "    {\n",
        "        \"question\": \"What is the recommended way to save and export a Jupyter Notebook as a static, shareable web page?\",\n",
        "        \"type\": \"many_choice\",\n",
        "        \"answers\": [\n",
@@ -1231,8 +1205,8 @@
        "           Someone more knowledgeable could make this better ;-) */\n",
        "\n",
        "        function try_show() {\n",
-       "          if(document.getElementById(\"KwBgXCiVPTed\")) {\n",
-       "            show_questions(questionsKwBgXCiVPTed,  KwBgXCiVPTed); \n",
+       "          if(document.getElementById(\"yAJbdECaRGYq\")) {\n",
+       "            show_questions(questionsyAJbdECaRGYq,  yAJbdECaRGYq); \n",
        "          } else {\n",
        "             setTimeout(try_show, 200);\n",
        "          }\n",
@@ -1241,8 +1215,8 @@
        "        {\n",
        "        // console.log(element);\n",
        "\n",
-       "        //console.log(\"KwBgXCiVPTed\");\n",
-       "        // console.log(document.getElementById(\"KwBgXCiVPTed\"));\n",
+       "        //console.log(\"yAJbdECaRGYq\");\n",
+       "        // console.log(document.getElementById(\"yAJbdECaRGYq\"));\n",
        "\n",
        "        try_show();\n",
        "        }\n",