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43 changes: 23 additions & 20 deletions cwltool/command_line_tool.py
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@
from enum import Enum
from functools import cmp_to_key, partial
from re import Pattern
from typing import TYPE_CHECKING, Any, Optional, TextIO, Union, cast
from typing import TYPE_CHECKING, Any, Iterable, Optional, TextIO, Union, cast

from mypy_extensions import mypyc_attr
from ruamel.yaml.comments import CommentedMap, CommentedSeq
Expand Down Expand Up @@ -1322,26 +1322,29 @@ def collect_output(
key=cmp_to_key(locale.strcoll),
)
r.extend(
[
{
"location": g,
"path": fs_access.join(
builder.outdir,
urllib.parse.unquote(g[len(prefix[0]) + 1 :]),
),
"basename": decoded_basename,
"nameroot": os.path.splitext(decoded_basename)[0],
"nameext": os.path.splitext(decoded_basename)[1],
"class": "File" if fs_access.isfile(g) else "Directory",
}
for g, decoded_basename in zip(
sorted_glob_result,
map(
lambda x: os.path.basename(urllib.parse.unquote(x)),
cast(
Iterable[CWLOutputType],
[
{
"location": g,
"path": fs_access.join(
builder.outdir,
urllib.parse.unquote(g[len(prefix[0]) + 1 :]),
),
"basename": decoded_basename,
"nameroot": os.path.splitext(decoded_basename)[0],
"nameext": os.path.splitext(decoded_basename)[1],
"class": "File" if fs_access.isfile(g) else "Directory",
}
for g, decoded_basename in zip(
sorted_glob_result,
),
)
]
map(
lambda x: os.path.basename(urllib.parse.unquote(x)),
sorted_glob_result,
),
)
],
)
)
except OSError as e:
_logger.warning(str(e), exc_info=builder.debug)
Expand Down
2 changes: 1 addition & 1 deletion mypy-requirements.txt
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
mypy==1.16.1 # also update pyproject.toml
mypy==1.17.0 # also update pyproject.toml
ruamel.yaml>=0.16.0,<0.19
cwl-utils>=0.32
cwltest
Expand Down
2 changes: 1 addition & 1 deletion pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@
requires = [
"setuptools>=45",
"setuptools_scm[toml]>=8.0.4,<9",
"mypy==1.16.1", # also update mypy-requirements.txt
"mypy==1.17.0", # also update mypy-requirements.txt
"types-requests",
"types-psutil",
"ruamel.yaml>=0.16.0,<0.19",
Expand Down