Add cochlea: MLR260L

Author: schilling40

scripts/measurements/evaluate_marker_annotations_subtype.py

@@ -15,10 +15,12 @@
 COCHLEAE = {
     "M_AMD_N180_L": {"seg_data": "SGN_merged", "subtype": ["CR", "Lypd1", "Ntng1"], "intensity": "absolute"},
     "M_AMD_N180_R": {"seg_data": "SGN_merged", "subtype": ["CR", "Ntng1"], "intensity": "absolute"},
+    "M_LR_000099_L": {"seg_data": "PV_SGN_v2", "subtype": ["Calb1", "Lypd1"], "intensity": "ratio"},
     "M_LR_000184_L": {"seg_data": "SGN_v2", "subtype": ["Prph"], "output_seg": "SGN_v2b", "intensity": "ratio"},
     "M_LR_000184_R": {"seg_data": "SGN_v2", "subtype": ["Prph"], "output_seg": "SGN_v2b", "intensity": "ratio"},
-    "M_LR_000099_L": {"seg_data": "PV_SGN_v2", "subtype": ["Calb1", "Lypd1"], "intensity": "ratio"},
     "M_LR_000214_L": {"seg_data": "PV_SGN_v2", "subtype": ["Calb1"], "intensity": "ratio"},
+    "M_LR_000260_L": {"seg_data": "SGN_v2", "subtype": ["Prph", "Tuj1"], "intensity": "ratio"},
+
 }
 
 

scripts/measurements/sgn_subtypes.py

@@ -60,7 +60,7 @@ def frequency_mapping(frequencies, values, animal="mouse", transduction_efficien
     "M_LR_000184_L": ["PV", "Prph"],
     "M_LR_000098_L": ["PV", "CR", "Ntng1"],
     "M_LR_N152_L": ["PV", "CR", "Ntng1"],
-    # "M_LR_000260_L": ["PV", "Prph", "Tuj1"],
+    "M_LR_000260_L": ["PV", "Prph", "Tuj1"],
 }
 
 COCHLEAE = {
@@ -75,7 +75,7 @@ def frequency_mapping(frequencies, values, animal="mouse", transduction_efficien
 
 
 REGULAR_COCHLEAE = [
-    "M_LR_000099_L", "M_LR_000184_R", "M_LR_000184_L", "M_LR_000098_L", "M_LR_N152_L"  # "M_LR_000260_L"
+    "M_LR_000099_L", "M_LR_000184_R", "M_LR_000184_L", "M_LR_000098_L", "M_LR_N152_L", "M_LR_000260_L"
 ]
 
 # For custom thresholds.