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Add script for measuring the number of SGNs #27
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Here are the counts I get with the script, which are different from the google sheets. |
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@schilling40 : this is ready now. It contains a (parallelized) implementation for intensity and volume measurements that should work with segmentations in MoBIE format (= ome.zarr + the table). The relevant functions are This is the functionality we will use for the first SGN + GFP measurements. The rest of the changes are just some improved tests, doc strings, and scripts that segment the new data from Aleyna and then apply these measurements. If you have time you could have a short look if everything makes sense. I will then merge it later. |
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