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This implements the more complex distance watershed logic from https://github.com/constantinpape/torch-em/blob/main/torch_em/util/segmentation.py#L179 in a parallel / lazy manner.

The implementation should work, but is not tested yet. Requires constantinpape/elf#125 .

@constantinpape constantinpape marked this pull request as ready for review May 21, 2025 06:36
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@schilling40 this is the implementation of the more complex watershed functionality, for the IHC segmentation.
The tests work, but I haven't actually checked that the results are correct, so we still need to check it on real data.

@schilling40 schilling40 merged commit c549e65 into master May 27, 2025
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@schilling40 schilling40 deleted the more-complex-watershed branch May 27, 2025 13:22
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3 participants