v1.3.0 🌈

New Light Microscopy Models

This release introduces a new light microscopy model that was trained on a larger dataset and clearly improves automatic segmentation.

See the improvements (qualitative and quantitative) of the new model:

The vit-b version of this model is the new default model used in micro_sam.

Changes

• Bump version @constantinpape (#877)
• Add link to new models on BioImage.IO @anwai98 (#873)
• Minor update to remove debugging scripts @anwai98 (#876)
• Change default model @constantinpape (#874)
• Merge dev into master @constantinpape (#872)
• Release preparation for new LM v3 models @anwai98 (#862)
• Add menu option for automatic segmentation modes @anwai98 (#793)
• Update README.md @constantinpape (#871)
• Create RELEASE_OVERVIEW.md @anwai98 (#867)
• Update LM generalist scripts @anwai98 (#822)
• Refactor model export for training scripts @constantinpape (#864)
• Minor update to automatic segmentation mode defaults in CLI @anwai98 (#863)
• Add CLI for training SAM @anwai98 (#860)
• Add garbage collection after commit and clear annotations @anwai98 (#789)
• Extend support for GUI training on RGB images @anwai98 (#859)
• Extend automatic segmentation CLI to allow continuing annotation @anwai98 (#858)
• Minor updates to benchmarking CLI with new LM datasets @anwai98 (#861)
• Add scripts for promptable segmentation using weak labels @anwai98 (#857)