Revision Experiments #121
Merged
Revision Experiments #121
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
constantinpape
commented
Jul 10, 2025
| return_predictions: bool = False, | ||
| scale: Optional[List[float]] = None, | ||
| exclude_boundary: bool = False, | ||
| exclude_boundary_vesicles: bool = False, |
There was a problem hiding this comment.
Should be added to doc string (I will take care of this in a follow up PR)
|
|
||
| if exclude_boundary: | ||
| seg = filter_border_objects(seg) | ||
| if exclude_boundary_vesicles: |
There was a problem hiding this comment.
We should think about the case exclude_boundary and exclude_boundary_vesicles. I don't think it makes sense (will take care of this in a follow-up PR)
| # Apply relabeling using a temp array (to avoid large ints in-place) | ||
| new_seg = np.zeros_like(seg, dtype=np.int32) | ||
| for old_label, new_label in label_map.items(): | ||
| new_seg[seg == old_label] = new_label |
There was a problem hiding this comment.
Replace with skimage.segmentation.label_sequential (I will take care of this in a follow up PR)
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Additional revision experiments