marsi - Metabolite Analogues for Rational Strain Improvement

marsi is an open-source software to created to identify non-GMO strain design targets

Dependencies

• eigen3 >= 3.0
• OpenBabel >= 2.2.3
• RDKit >= 2016
• glpk
• cplex (optional)
• Cython >= 0.25
• numpy >= 1.11

Quick Start

1. Install the Dependencies
2. pip install marsi
3. Run marsi --help from the command line

More details in Quick Start

Initialization

marsi comes with a initialization command that will download all the necessary files and build the database. You can start by running marsi db --help.

marsi will download the required files for you, setup the database and process the molecular structures. Just run marsi db init. Make sure you have an stable internet connection.

Documentation

Complete documentation can be found at https://biosustain.github.io/marsi.

License

Apache License Version 2.0

Databases and Software Tools

All tools and databases are listed here