Single Cell Biotechnology Laboratory @GATech
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SpatialViz
SpatialViz PublicCode for "Spatially visualized single-cell pathology of highly multiplexed protein profiles in health and disease"
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Ion-Beam-Tomography
Ion-Beam-Tomography PublicCode for "Nanoscopic subcellular imaging enabled by Ion Beam Tomography"
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Spatial-organelle-networks
Spatial-organelle-networks PublicData and code for "Spatial subcellular organelle networks in single cells"
Repositories
- 3D-iseqPLA Public
coskunlab/3D-iseqPLA’s past year of commit activity - MAGIC Public
Guided super-resolution MSI and graph-based metabolic barcoding for high-definition, single-cell spatial metabolomics and tissue microenvironment analysis.
coskunlab/MAGIC’s past year of commit activity - spatialcurvseq Public
coskunlab/spatialcurvseq’s past year of commit activity - MetaboFM Public
MetaboFM: A foundation model for spatial metabolomics — unifying large-scale mass spectrometry imaging (MSI) data curation, Vision Transformer–based representation learning, multimodal visual question answering (VQA), and spatio-spectral interpretability.
coskunlab/MetaboFM’s past year of commit activity - PRISMS Public
Python-based Robotic Imaging and Staining for Modular Spatial omics (PRISMS), an open-sourced, automated multiplexing pipeline compatible with several sample types and Nikon NIS Elements Basic Research software
coskunlab/PRISMS’s past year of commit activity - GSR-PPI Public
Graph-based spatial proximity of super-resolved protein-protein interactions predict cancer drug responses in single cells
coskunlab/GSR-PPI’s past year of commit activity - GSR_MSI Public
coskunlab/GSR_MSI’s past year of commit activity - Snowflake Public
coskunlab/Snowflake’s past year of commit activity
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