Skip to content

'map' uses prohibitive amount of memory when K=20 #26

@kbchoi

Description

@kbchoi

Hi,

Thank you for providing a useful tool. I have got an issue though while computing (20, 2)-mappability with the prebuilt index of human genome (grch38-no-alt). It uses up the entire 500GB of memory on my ec2 instance and the process get killed. Is this something too much to ask for the tool? I'd appreciate any comment. Thanks.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions