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Guidance on Choosing k-mer Length for Paired-End Data

Status: Open.

#35 In cpockrandt/genmap;

· JuseTiZ opened on Jun 11, 2025

Genmap map genome/chromsome size limit

Status: Open.

#34 In cpockrandt/genmap;

· o-william-white opened on Nov 19, 2024

Links

Status: Open.

#33 In cpockrandt/genmap;

· jamesdalg opened on Sep 30, 2024

out of memmory

Status: Open.

#31 In cpockrandt/genmap;

· guandailu opened on Aug 20, 2023

Doesn't build on Apple silicon

Status: Open.

#30 In cpockrandt/genmap;

· gsherloc opened on Aug 9, 2023

Genmap map : error E>4 is not supported

Status: Open.

#29 In cpockrandt/genmap;

· ranjit58 opened on Dec 13, 2022

Finding unique k-mer

Status: Open.

#28 In cpockrandt/genmap;

· yliasolom opened on Dec 8, 2022

How do I know about a genome and which other genomes have a common kmer？

Status: Open.

#27 In cpockrandt/genmap;

· bernicegu opened on Oct 27, 2022

'map' uses prohibitive amount of memory when K=20

Status: Open.

#26 In cpockrandt/genmap;

· kbchoi opened on Aug 4, 2022

interpretation of output values

Status: Open.

#24 In cpockrandt/genmap;

· edg1983 opened on Dec 10, 2021

How we can use genmap scores ?

Status: Open.

#23 In cpockrandt/genmap;

· AstrMary opened on Nov 3, 2021

can genmap map run with very large values

Status: Open.

#19 In cpockrandt/genmap;

· splaisan opened on Jun 4, 2020