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Bump the python-packages group with 7 updates #179

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Bumps the python-packages group with 7 updates:

Package From To
pyarrow 22.0.0 23.0.0
opencv-python 4.12.0.88 4.13.0.90
imagecodecs 2026.1.1 2026.1.14
ome-arrow 0.0.4 0.0.5
jupytext 1.18.1 1.19.0
black 25.12.0 26.1.0
myst-parser 4.0.1 5.0.0

Updates pyarrow from 22.0.0 to 23.0.0

Release notes

Sourced from pyarrow's releases.

Apache Arrow 23.0.0

Release Notes URL: https://arrow.apache.org/release/23.0.0.html

Apache Arrow 23.0.0 RC2

Release Notes: Release Candidate: 23.0.0 RC2

Commits
  • eafe3a9 MINOR: [Release] Update versions for 23.0.0
  • 45781e8 MINOR: [Release] Update .deb/.rpm changelogs for 23.0.0
  • 365e5ac MINOR: [Release] Update CHANGELOG.md for 23.0.0
  • e33512d GH-48841: [Release][Package] Add GH_TOKEN to rake build step on Linux Packagi...
  • 86d28e9 GH-48838: [Release] Use gh cli to download sources for Linux packages and pub...
  • b6362d0 GH-48582: [CI][GPU][C++][Python] Add new CUDA jobs using the new self-hosted ...
  • 8fb7a53 GH-48827: [CI][Python] Add required xz dependency to emscripten dockerfile (#...
  • 342c5d5 GH-48809: [CI] Fix homebrew-cpp with Mac by using formula-based dependency re...
  • 8955bbf GH-48631: [R] Non-API calls: 'ATTRIB', 'SET_ATTRIB' (#48634)
  • b90a2b8 GH-48314: [Python] Compat with pandas 3.0 changed default datetime unit (#48319)
  • Additional commits viewable in compare view

Updates opencv-python from 4.12.0.88 to 4.13.0.90

Release notes

Sourced from opencv-python's releases.

4.13.0.90

Complete OpenCV 4.13.0 changelog: https://github.com/opencv/opencv/wiki/OpenCV-Change-Logs#version4130

Python specific:

  • Manylinux 2_28 support, Numpy 2.4 support, Python 3.14 support
  • Tuned Python bindings for logging #27812 Marked Feature2D.detectAndCompute mask as optional in Python type stubs #27544 Marked distCoeffs/R/D as optional in calib3d functions #27564 Added DLPACK support #27581, #27861 Fixed memory leaks in pybindings #27738 Add PathLike type hints for args annotated with CV_WRAP_FILE_PATH #27767 Fixed memory leak in pyopencv_to for path-like objects #28047 Tunned Python bindings: use export_name as resolved typename for AliasTypeNode #27997 python: fix pytest-cov false warnings by using compile() with full file path in exec_file_wrapper #28093 Fixed python scalar typing issues #27620 Fixed bug in ifdef state machine in header parser for bindings #27393 Wrap GridType field in cv::findCirclesGrid parameters structure #27689
Commits

Updates imagecodecs from 2026.1.1 to 2026.1.14

Release notes

Sourced from imagecodecs's releases.

v2026.1.14

Image transformation, compression, and decompression codecs

Imagecodecs is a Python library that provides block-oriented, in-memory buffer transformation, compression, and decompression functions for use in tifffile, liffile, czifile, zarr, and other scientific image input/output packages.

Decode and/or encode functions are implemented for Zlib (DEFLATE), GZIP, LZMA, ZStandard (ZSTD), Blosc, Brotli, Snappy, BZ2, LZ4, LZ4F, LZ4HC, LZ4H5, LZW, LZO, LZF, LZFSE, LZHAM, PGLZ (PostgreSQL LZ), RCOMP (Rice), ZFP, SZ3, Meshopt, Pcodec, SPERR, AEC, SZIP, LERC, EER, NPY, BCn, DDS, BMP, PNG, APNG, GIF, TIFF, WebP, JPEG (2 to 16-bit), Lossless JPEG (LJPEG, LJ92, JPEGLL), JPEG 2000 (JP2, J2K), High-throughput JPEG 2000 (HTJ2K, JPH), JPEG LS, JPEG XL, JPEG XS, JPEG XR (WDP, HD Photo), Ultra HDR (JPEG_R), MOZJPEG, AVIF, HEIF, QOI, RGBE (HDR), Jetraw, DICOM RLE, PackBits, Packed Integers, Delta, XOR Delta, Floating Point Predictor, Bitorder reversal, Byteshuffle, Bitshuffle, Float24 (24-bit floating point), Bfloat16 (brain floating point), Quantize (Scale, BitGroom, BitRound, GranularBR), and CMS (color space transformations). Checksum functions are implemented for CRC-32, Adler-32, Fletcher-32, and Jenkins lookup3.

Changes

  • Add tiff_encode function.
  • Add extra options for HTJ2K (#134).
  • Add linear RGB option to cms_profile.
  • Change ZSTD default compression level to 3.
Changelog

Sourced from imagecodecs's changelog.

Commits

Updates ome-arrow from 0.0.4 to 0.0.5

Release notes

Sourced from ome-arrow's releases.

v0.0.5

Changes

  • Add optional vortex file format capabilities (@​d33bs via #15)
  • Automatically scale ome-tiff and ome-zarr data (@​d33bs via #14)
  • Update header to avoid squishing it on web views (@​d33bs via #13)
Commits
  • cffe1e1 Add optional vortex file format capabilities (#15)
  • de76fe4 Automatically scale ome-tiff and ome-zarr data (#14)
  • 552b995 Update header to avoid squishing it on web views (#13)
  • See full diff in compare view

Updates jupytext from 1.18.1 to 1.19.0

Release notes

Sourced from jupytext's releases.

Version 1.19.0

1.19.0 (2026-01-18)

Changes

  • The environment used to develop Jupytext is now maintained using Pixi (#1459)

Fixed

  • We have restored the support for .qmd documents in Jupyter (#1435)
  • We have fixed warnings about the cell ids like either Cell is missing an id field or Additional properties are not allowed ('id' was unexpected) when converting to some formats, including Pandoc (#1464)
  • We have updated the dependencies of the Jupytext extension for JupyterLab. Many thanks to Mahendra Paipuri for his PR (#1477)!

Added

  • We have added a new py:marimo format, which uses the marimo command line interface to convert notebooks to and from the Marimo format (#1431)

Version 1.19.0.dev0

1.19.0.dev0 (2025-11-16)

Changes The environment used to develop Jupytext is now maintained using Pixi (#1459)

Fixed

  • We have fixed the round trip tests and made them work with Quarto 1.8.25 (#1435)
  • We have fixed warnings about the cell ids like either Cell is missing an id field or Additional properties are not allowed ('id' was unexpected) when converting to some formats, including Pandoc (#1464)

Added We have added a new py:marimo format, which uses the marimo command line interface to convert notebooks to and from the Marimo format (#1431)

Changelog

Sourced from jupytext's changelog.

1.19.0 (2026-01-18)

Changes

  • The environment used to develop Jupytext is now maintained using Pixi (#1459)

Fixed

  • We have restored the support for .qmd documents in Jupyter (#1435)
  • We have fixed warnings about the cell ids like either Cell is missing an id field or Additional properties are not allowed ('id' was unexpected) when converting to some formats, including Pandoc (#1464)
  • We have updated the dependencies of the Jupytext extension for JupyterLab. Many thanks to Mahendra Paipuri for his PR (#1477)!

Added

  • We have added a new py:marimo format, which uses the marimo command line interface to convert notebooks to and from the Marimo format (#1431)
Commits

Updates black from 25.12.0 to 26.1.0

Release notes

Sourced from black's releases.

26.1.0

Highlights

Introduces the 2026 stable style (#4892), stabilizing the following changes:

  • always_one_newline_after_import: Always force one blank line after import statements, except when the line after the import is a comment or an import statement (#4489)
  • fix_fmt_skip_in_one_liners: Fix # fmt: skip behavior on one-liner declarations, such as def foo(): return "mock" # fmt: skip, where previously the declaration would have been incorrectly collapsed (#4800)
  • fix_module_docstring_detection: Fix module docstrings being treated as normal strings if preceded by comments (#4764)
  • fix_type_expansion_split: Fix type expansions split in generic functions (#4777)
  • multiline_string_handling: Make expressions involving multiline strings more compact (#1879)
  • normalize_cr_newlines: Add \r style newlines to the potential newlines to normalize file newlines both from and to (#4710)
  • remove_parens_around_except_types: Remove parentheses around multiple exception types in except and except* without as (#4720)
  • remove_parens_from_assignment_lhs: Remove unnecessary parentheses from the left-hand side of assignments while preserving magic trailing commas and intentional multiline formatting (#4865)
  • standardize_type_comments: Format type comments which have zero or more spaces between # and type: or between type: and value to # type: (value) (#4645)

The following change was not in any previous stable release:

  • Regenerated the _width_table.py and added tests for the Khmer language (#4253)

This release alo bumps pathspec to v1 and fixes inconsistencies with Git's .gitignore logic (#4958). Now, files will be ignored if a pattern matches them, even if the parent directory is directly unignored. For example, Black would previously format exclude/not_this/foo.py with this .gitignore:

exclude/
!exclude/not_this/

Now, exclude/not_this/foo.py will remain ignored. To ensure exclude/not_this/ and all of it's children are included in formatting (and in Git), use this .gitignore:

*/exclude/*
!*/exclude/not_this/

This new behavior matches Git. The leading */ are only necessary if you wish to ignore matching subdirectories (like the previous behavior did), and not just matching root

... (truncated)

Changelog

Sourced from black's changelog.

26.1.0

Highlights

Introduces the 2026 stable style (#4892), stabilizing the following changes:

  • always_one_newline_after_import: Always force one blank line after import statements, except when the line after the import is a comment or an import statement (#4489)
  • fix_fmt_skip_in_one_liners: Fix # fmt: skip behavior on one-liner declarations, such as def foo(): return "mock" # fmt: skip, where previously the declaration would have been incorrectly collapsed (#4800)
  • fix_module_docstring_detection: Fix module docstrings being treated as normal strings if preceded by comments (#4764)
  • fix_type_expansion_split: Fix type expansions split in generic functions (#4777)
  • multiline_string_handling: Make expressions involving multiline strings more compact (#1879)
  • normalize_cr_newlines: Add \r style newlines to the potential newlines to normalize file newlines both from and to (#4710)
  • remove_parens_around_except_types: Remove parentheses around multiple exception types in except and except* without as (#4720)
  • remove_parens_from_assignment_lhs: Remove unnecessary parentheses from the left-hand side of assignments while preserving magic trailing commas and intentional multiline formatting (#4865)
  • standardize_type_comments: Format type comments which have zero or more spaces between # and type: or between type: and value to # type: (value) (#4645)

The following change was not in any previous stable release:

  • Regenerated the _width_table.py and added tests for the Khmer language (#4253)

This release alo bumps pathspec to v1 and fixes inconsistencies with Git's .gitignore logic (#4958). Now, files will be ignored if a pattern matches them, even if the parent directory is directly unignored. For example, Black would previously format exclude/not_this/foo.py with this .gitignore:

exclude/
!exclude/not_this/

Now, exclude/not_this/foo.py will remain ignored. To ensure exclude/not_this/ and all of it's children are included in formatting (and in Git), use this .gitignore:

*/exclude/*
!*/exclude/not_this/

This new behavior matches Git. The leading */ are only necessary if you wish to ignore

... (truncated)

Commits

Updates myst-parser from 4.0.1 to 5.0.0

Release notes

Sourced from myst-parser's releases.

v5.0.0

MyST-Parser 5.0.0

Release Date: 2026-01-15

This release significantly bumps the supported versions of core dependencies:

‼️ Breaking Changes

This release updates the minimum supported versions:

  • Python: >=3.11 (dropped Python 3.10, tests up to 3.14)
  • Sphinx: >=8,<10 (dropped Sphinx 7, added Sphinx 9)
  • Docutils: >=0.20,<0.23 (dropped docutils 0.19, added docutils 0.22)
  • markdown-it-py: ~=4.0 (upgraded from v3)

⬆️ Dependency Upgrades

👌 Improvements

📚 Documentation

🔧 Internal / Maintenance

Full Changelog: v4.0.1...v5.0.0

Changelog

Sourced from myst-parser's changelog.

5.0.0 - 2026-01-15

This release significantly bumps the supported versions of core dependencies:

‼️ Breaking Changes

This release updates the minimum supported versions:

  • Python: >=3.11 (dropped Python 3.10, tests up to 3.14)
  • Sphinx: >=8,<10 (dropped Sphinx 7, added Sphinx 9)
  • Docutils: >=0.20,<0.23 (dropped docutils 0.19, added docutils 0.22)
  • markdown-it-py: ~=4.0 (upgraded from v3)

⬆️ Dependency Upgrades

  • ⬆️ Upgrade to markdown-it-py v4 by gh-user:chrisjsewell in gh-pr:1060
  • ⬆️ Drop Python 3.10 and Sphinx 7 by gh-user:chrisjsewell in gh-pr:1059
  • ⬆️ Drop docutils 0.19 by gh-user:chrisjsewell in gh-pr:1061
  • ⬆️ Add support for Python 3.14 by gh-user:chrisjsewell in gh-pr:1075
  • ⬆️ Support Sphinx v9 by gh-user:chrisjsewell in gh-pr:1076
  • ⬆️ Allow docutils 0.22 by gh-user:chrisjsewell in gh-pr:1084

👌 Improvements

  • 👌 Improve generation of meta nodes by gh-user:AA-Turner in gh-pr:1080

📚 Documentation

  • 📚 Fix typo in tables.md by gh-user:electricalgorithm in gh-pr:1034
  • 📚 Fix minor typo in cross-referencing.md by gh-user:krassowski in gh-pr:1036

🔧 Internal / Maintenance

  • 🔧 Update pre-commit by gh-user:chrisjsewell in gh-pr:1058
  • 🔧 Add AGENTS.md by gh-user:chrisjsewell in gh-pr:1083

Full Changelog: v4.0.1...v5.0.0

Commits

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@dependabot
Bump the python-packages group with 7 updates
a304f46 
Bumps the python-packages group with 7 updates:

| Package | From | To |
| --- | --- | --- |
| [pyarrow](https://github.com/apache/arrow) | `22.0.0` | `23.0.0` |
| [opencv-python](https://github.com/opencv/opencv-python) | `4.12.0.88` | `4.13.0.90` |
| [imagecodecs](https://github.com/cgohlke/imagecodecs) | `2026.1.1` | `2026.1.14` |
| [ome-arrow](https://github.com/wayscience/ome-arrow) | `0.0.4` | `0.0.5` |
| [jupytext](https://github.com/mwouts/jupytext) | `1.18.1` | `1.19.0` |
| [black](https://github.com/psf/black) | `25.12.0` | `26.1.0` |
| [myst-parser](https://github.com/executablebooks/MyST-Parser) | `4.0.1` | `5.0.0` |


Updates `pyarrow` from 22.0.0 to 23.0.0
- [Release notes](https://github.com/apache/arrow/releases)
- [Commits](apache/arrow@apache-arrow-22.0.0...apache-arrow-23.0.0)

Updates `opencv-python` from 4.12.0.88 to 4.13.0.90
- [Release notes](https://github.com/opencv/opencv-python/releases)
- [Commits](https://github.com/opencv/opencv-python/commits)

Updates `imagecodecs` from 2026.1.1 to 2026.1.14
- [Release notes](https://github.com/cgohlke/imagecodecs/releases)
- [Changelog](https://github.com/cgohlke/imagecodecs/blob/master/CHANGES.rst)
- [Commits](cgohlke/imagecodecs@v2026.1.1...v2026.1.14)

Updates `ome-arrow` from 0.0.4 to 0.0.5
- [Release notes](https://github.com/wayscience/ome-arrow/releases)
- [Commits](WayScience/ome-arrow@v0.0.4...v0.0.5)

Updates `jupytext` from 1.18.1 to 1.19.0
- [Release notes](https://github.com/mwouts/jupytext/releases)
- [Changelog](https://github.com/mwouts/jupytext/blob/main/CHANGELOG.md)
- [Commits](mwouts/jupytext@v1.18.1...v1.19.0)

Updates `black` from 25.12.0 to 26.1.0
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](psf/black@25.12.0...26.1.0)

Updates `myst-parser` from 4.0.1 to 5.0.0
- [Release notes](https://github.com/executablebooks/MyST-Parser/releases)
- [Changelog](https://github.com/executablebooks/MyST-Parser/blob/master/CHANGELOG.md)
- [Commits](executablebooks/MyST-Parser@v4.0.1...v5.0.0)

---
updated-dependencies:
- dependency-name: pyarrow
  dependency-version: 23.0.0
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: python-packages
- dependency-name: opencv-python
  dependency-version: 4.13.0.90
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: imagecodecs
  dependency-version: 2026.1.14
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-packages
- dependency-name: ome-arrow
  dependency-version: 0.0.5
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-packages
- dependency-name: jupytext
  dependency-version: 1.19.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: black
  dependency-version: 26.1.0
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: python-packages
- dependency-name: myst-parser
  dependency-version: 5.0.0
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: python-packages
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Jan 19, 2026
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Jan 19, 2026
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